BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0763200 Os01g0763200|AK071964
(307 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0763200 Similar to Transcription factor PCF7 (Fragment) 444 e-125
Os05g0513100 Similar to PlCYC4 protein (Fragment) 171 6e-43
Os07g0152000 TCP transcription factor family protein 112 3e-25
Os03g0785800 Similar to Transcription factor PCF6 (Fragment) 106 2e-23
Os01g0755500 Similar to Transcription factor PCF7 (Fragment) 92 6e-19
Os01g0213800 Transcription factor PCF5 90 2e-18
Os12g0112200 79 3e-15
Os09g0410500 Similar to SfCYC2 protein (Fragment) 72 4e-13
Os08g0432300 70 2e-12
>Os01g0763200 Similar to Transcription factor PCF7 (Fragment)
Length = 307
Score = 444 bits (1142), Expect = e-125, Method: Compositional matrix adjust.
Identities = 230/307 (74%), Positives = 230/307 (74%)
Query: 1 MILGSNQXXXXXXXXXXXXXXXXXLARKHTAAVATSRQWSAQTESRIVRVSRVFGGKDRH 60
MILGSNQ LARKHTAAVATSRQWSAQTESRIVRVSRVFGGKDRH
Sbjct: 1 MILGSNQAAAAAAAAAAAEEEAAELARKHTAAVATSRQWSAQTESRIVRVSRVFGGKDRH 60
Query: 61 SKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFP 120
SKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFP
Sbjct: 61 SKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFP 120
Query: 121 PQDHLCMGHHHHLPSAMPLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
PQDHLCMGHHHHLPSAMPLM
Sbjct: 121 PQDHLCMGHHHHLPSAMPLMHHHGHHHHADDDKYHVAAAAAALAAEKEAAAAGGGGGGGG 180
Query: 181 XXXXXXXXXXXXXIVGRFPAGGYHRFMGLNNPLGMVNSAAGAAMPFHYAGESWNNGSVQD 240
IVGRFPAGGYHRFMGLNNPLGMVNSAAGAAMPFHYAGESWNNGSVQD
Sbjct: 181 DDVDGGGGGGAAHIVGRFPAGGYHRFMGLNNPLGMVNSAAGAAMPFHYAGESWNNGSVQD 240
Query: 241 SGAGSPQVXXXXXXXTSPFPSLLSLAPGPHHQLVFYSSEAEQFTVDNLGSQGLSLSSARA 300
SGAGSPQV TSPFPSLLSLAPGPHHQLVFYSSEAEQFTVDNLGSQGLSLSSARA
Sbjct: 241 SGAGSPQVAAAAAHHTSPFPSLLSLAPGPHHQLVFYSSEAEQFTVDNLGSQGLSLSSARA 300
Query: 301 FHDQTGS 307
FHDQTGS
Sbjct: 301 FHDQTGS 307
>Os05g0513100 Similar to PlCYC4 protein (Fragment)
Length = 294
Score = 171 bits (433), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 84/88 (95%)
Query: 37 RQWSAQTESRIVRVSRVFGGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQP 96
R WSA TESRIVRVSRVFGGKDRHSKV+TVKGLRDRRVRLSVPTAIQLYDLQDRLGL+QP
Sbjct: 36 RHWSASTESRIVRVSRVFGGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQP 95
Query: 97 SKVVDWLLNAARHEIDKLPPLQFPPQDH 124
SKVVDWL+NAA+ EIDKLPPLQFPP DH
Sbjct: 96 SKVVDWLINAAQAEIDKLPPLQFPPHDH 123
>Os07g0152000 TCP transcription factor family protein
Length = 445
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 59/73 (80%)
Query: 45 SRIVRVSRVFGGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLL 104
SRI RVSR GGKDRHSKV T KG+RDRRVRLSV TAIQ YDLQDRLG +QPSK ++WL+
Sbjct: 50 SRIYRVSRASGGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLI 109
Query: 105 NAARHEIDKLPPL 117
AA IDKLP L
Sbjct: 110 KAAAAAIDKLPSL 122
>Os03g0785800 Similar to Transcription factor PCF6 (Fragment)
Length = 312
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/67 (71%), Positives = 53/67 (79%)
Query: 52 RVFGGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEI 111
R GGKDRHSKV T KG+RDRRVRLSV TAIQ YDLQDRLG +QPSK ++WL+NAA I
Sbjct: 3 RATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAI 62
Query: 112 DKLPPLQ 118
D LP L
Sbjct: 63 DTLPSLD 69
>Os01g0755500 Similar to Transcription factor PCF7 (Fragment)
Length = 443
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 54/70 (77%), Gaps = 2/70 (2%)
Query: 46 RIVRVSRVFGGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLN 105
RIVR + G KDRHSKV T +GLRDRRVRL+ TAI+ YD+QDRLG ++PSK VDWL+
Sbjct: 118 RIVRSA--AGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMR 175
Query: 106 AARHEIDKLP 115
A+ ID+LP
Sbjct: 176 NAKAAIDELP 185
>Os01g0213800 Transcription factor PCF5
Length = 458
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 49/65 (75%)
Query: 50 VSRVFGGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARH 109
+ R G KDRHSKV T +G RDRRVRLS TAIQ YD+QDRLG ++PSK VDWL+ A+
Sbjct: 83 IVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKD 142
Query: 110 EIDKL 114
IDKL
Sbjct: 143 AIDKL 147
>Os12g0112200
Length = 141
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 46 RIVRVSRVFGG-KDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLL 104
R RV+ V G KD+HSKV T +GLRDR VRLSVP AI YD+QDRLG++QPSK ++W +
Sbjct: 6 RTSRVACVVAGEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSKAIEWHI 65
Query: 105 NAARHEID 112
AA ID
Sbjct: 66 RAAAAAID 73
>Os09g0410500 Similar to SfCYC2 protein (Fragment)
Length = 258
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 43/57 (75%)
Query: 58 DRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKL 114
DRHSK++T +G+RDRR+RLS+ A + LQDRLG ++ SK VDWLL ++ ID+L
Sbjct: 79 DRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRL 135
>Os08g0432300
Length = 263
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 44/57 (77%)
Query: 58 DRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKL 114
DRHSK++T +G+RDRR+RLSV A + LQD+LG ++ S+ V+WLL ++H I++L
Sbjct: 87 DRHSKIRTAQGVRDRRMRLSVGVARDFFALQDKLGFDKASRTVEWLLTQSKHAINRL 143
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.133 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,726,654
Number of extensions: 335262
Number of successful extensions: 770
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 768
Number of HSP's successfully gapped: 11
Length of query: 307
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 206
Effective length of database: 11,762,187
Effective search space: 2423010522
Effective search space used: 2423010522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)