Os07g0152000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TCP transcription factor family protein.
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Os07g0152000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TCP transcription factor family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.52 | 0.292 | 9.85 | 1.9 | 0.27 | -0.519 | -0.348 | 1.73 | 0.734 | 18.9 | 20.9 | 1316 | -- | -- |
| 41.45 | 0.3 | 9.89 | 1.51 | 0.287 | -0.417 | -0.335 | -- | 0.653 | 18.4 | 18.87 | 9800 | -- | -- |
| 38.79 | 0.29 | 9.84 | 1.92 | 0.277 | -0.494 | -- | 1.75 | 0.736 | 18.4 | 21.15 | 1443 | -- | -- |
| 41.45 | 0.3 | 9.89 | 1.54 | 0.296 | -0.548 | -- | -- | 0.662 | 17.9 | 13 | 9082 | -- | -- |
| 42.58 | 0.304 | 9.84 | 1.9 | -- | -0.522 | -- | 1.7 | 0.73 | -- | 21.12 | 1349 | -- | -- |
| 46.11 | 0.318 | 9.93 | 1.24 | 0.288 | -- | -0.318 | -- | 0.497 | 18.2 | -- | -- | -- | -- |
| 46.36 | 0.319 | 9.93 | 1.25 | 0.287 | -- | -- | -- | 0.496 | 18.1 | -- | -- | -- | -- |
| 45.29 | 0.313 | 9.89 | 1.41 | -- | -0.383 | -- | -- | 0.638 | -- | 22.9 | 8550 | -- | -- |
| 63.55 | 0.371 | 10 | -- | 0.263 | 0.763 | -- | -- | 0.101 | 17.5 | 15.5 | 47520 | -- | -- |
| 50.62 | 0.332 | 9.92 | 1.24 | -- | -- | -- | -- | 0.489 | -- | -- | -- | -- | -- |
| 87.32 | 0.437 | 9.96 | -- | 0.269 | -- | -- | -- | 0.357 | 18.3 | -- | -- | -- | -- |
| 67.73 | 0.383 | 10 | -- | -- | 0.751 | -- | -- | 0.112 | -- | 15.4 | 47520 | -- | -- |
| 91.08 | 0.445 | 9.95 | -- | -- | -- | -- | -- | 0.352 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.87 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 2 | 36.87 | humidity | 80 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 5 | 36.90 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 10 | 37.03 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 4 |
| 21 | 37.16 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 21 |
| 24 | 37.19 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 36 | 37.29 | humidity | 80 | 14400 | > th | dose independent | rect. | 7 | 13 |
| 45 | 37.34 | humidity | 80 | 14400 | < th | dose independent | rect. | 8 | 12 |
| 51 | 37.41 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 56 | 37.43 | humidity | 80 | 14400 | < th | dose independent | rect. | 8 | 5 |
| 78 | 37.50 | humidity | 80 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 125 | 37.63 | humidity | 70 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 165 | 37.73 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 172 | 37.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 173 | 37.77 | humidity | 80 | 14400 | > th | dose independent | sin | 22 | NA |
| 191 | 37.81 | humidity | 80 | 14400 | < th | dose independent | sin | 22 | NA |
| 233 | 37.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 11 |
| 240 | 37.88 | humidity | 70 | 14400 | > th | dose dependent | rect. | 11 | 9 |
| 243 | 37.89 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 304 | 37.97 | humidity | 60 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 334 | 38.00 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 363 | 38.03 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 369 | 38.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 21 |
| 373 | 38.04 | humidity | 90 | 14400 | > th | dose dependent | sin | 16 | NA |
| 439 | 38.11 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 440 | 38.11 | humidity | 70 | 14400 | > th | dose dependent | sin | 20 | NA |
| 581 | 38.22 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 3 |
| 596 | 38.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 622 | 38.25 | humidity | 70 | 14400 | > th | dose dependent | rect. | 9 | 6 |
| 647 | 38.27 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 691 | 38.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 988 | 38.46 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |