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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0410500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to SfCYC2 protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0423) R2 : 0.0738
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.833 (0.152) R2dE : 0.0621 R2E : 0.0659
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.154 (0.0898) R2dN8 : 0.00791 R2N8 : 0.0117
σ : 0.796
deviance : 290.16
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 999.7
memory length : 13
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
280.68 0.787 3.13 -1.4 0.236 -4.06 -0.313 17.9 -0.182 2.96 999.7 12 -- --
285.1 0.792 2.92 -0.241 0.249 -0.883 -0.239 -- -0.183 2.73 999.7 12 -- --
280.98 0.787 3.13 -1.37 0.234 -4.01 -- 17.6 -0.18 2.65 999.8 10 -- --
285.28 0.792 2.92 -0.236 0.248 -0.886 -- -- -0.181 2.48 999.7 13 -- --
284.17 0.789 3.13 -1.41 -- -4.14 -- 18.4 -0.175 -- 999.8 8 -- --
305.81 0.82 2.94 -0.0889 0.225 -- -0.338 -- -0.24 3.01 -- -- -- --
306.17 0.819 2.94 -0.0814 0.223 -- -- -- -0.238 2.64 -- -- -- --
288.89 0.795 2.92 -0.223 -- -0.87 -- -- -0.176 -- 999.7 13 -- --
286.71 0.793 2.92 -- 0.242 -0.846 -- -- -0.158 2.47 999.7 14 -- --
309.07 0.821 2.93 -0.0719 -- -- -- -- -0.232 -- -- -- -- --
306.34 0.819 2.93 -- 0.221 -- -- -- -0.229 2.64 -- -- -- --
290.16 0.796 2.92 -- -- -0.833 -- -- -0.154 -- 999.7 13 -- --
309.21 0.821 2.93 -- -- -- -- -- -0.224 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 278.56 atmosphere 1000 10 < th dose independent rect. 23 21
17 280.42 atmosphere 1000 10 < th dose independent rect. 17 22
21 280.75 atmosphere 1000 10 > th dose independent sin 1 NA
25 280.85 atmosphere 1000 30 > th dose independent rect. 19 23
29 280.91 temperature 30 1440 < th dose independent rect. 10 1
34 281.06 atmosphere 1000 10 < th dose independent sin 1 NA
37 281.25 atmosphere 1000 10 < th dose independent rect. 23 16
49 281.52 temperature 30 1440 > th dose independent rect. 10 1
55 281.60 atmosphere 1000 10 < th dose independent rect. 6 21
57 281.63 atmosphere 1000 10 < th dose independent rect. 4 23
60 281.67 temperature 30 90 > th dose dependent sin 9 NA
71 281.82 atmosphere 1000 270 > th dose independent sin 3 NA
82 281.97 temperature 30 270 > th dose independent rect. 18 17
86 282.02 atmosphere 1000 270 < th dose independent rect. 4 22
91 282.11 temperature 30 4320 < th dose independent rect. 4 8
105 282.22 temperature 30 4320 < th dose independent rect. 8 4
111 282.25 temperature 30 4320 < th dose independent rect. 19 17
112 282.26 temperature 30 4320 < th dose independent rect. 23 13
122 282.29 atmosphere 1000 270 > th dose independent rect. 17 22
126 282.31 temperature 30 90 > th dose dependent rect. 17 20
153 282.50 temperature 30 270 > th dose independent rect. 8 3
174 282.64 atmosphere 1000 270 < th dose independent sin 3 NA
186 282.74 atmosphere 1010 10 < th dose dependent rect. 22 22
195 282.81 atmosphere 1010 90 < th dose dependent rect. 22 21
204 282.84 atmosphere 1000 10 > th dose independent no NA NA
206 282.84 atmosphere 1000 10 < th dose independent no NA NA
211 282.88 atmosphere 1000 10 < th dose independent rect. 9 23
222 282.96 atmosphere 1000 10 < th dose independent rect. 1 23
226 283.01 atmosphere 1000 10 < th dose independent rect. 6 8
242 283.11 atmosphere 1000 10 < th dose independent rect. 19 23
246 283.12 atmosphere 1000 10 < th dose independent rect. 11 23
247 283.12 atmosphere 995 10 > th dose dependent rect. 19 23
266 283.15 temperature 25 4320 > th dose dependent rect. 23 8
268 283.17 atmosphere 1000 270 < th dose independent rect. 7 4
274 283.21 atmosphere 1000 10 < th dose independent rect. 13 23
285 283.25 temperature 30 270 > th dose independent sin 10 NA
290 283.27 atmosphere 1000 270 < th dose dependent rect. 7 5
307 283.36 temperature 25 4320 > th dose dependent rect. 23 2
308 283.37 atmosphere 1000 10 < th dose independent rect. 6 14
315 283.39 atmosphere 1000 270 < th dose independent rect. 13 23
343 283.52 temperature 25 4320 > th dose independent rect. 23 5
375 283.56 temperature 25 4320 > th dose dependent rect. 22 4
399 283.60 atmosphere 1000 720 > th dose independent rect. 19 16
435 283.77 temperature 30 4320 > th dose dependent rect. 11 1
438 283.78 temperature 30 270 < th dose independent sin 10 NA
440 283.78 atmosphere 1000 270 > th dose independent no NA NA
442 283.78 atmosphere 1000 90 < th dose dependent rect. 9 4
447 283.79 temperature 30 270 > th dose dependent rect. 18 17
457 283.84 atmosphere 1000 270 < th dose independent no NA NA
487 283.98 temperature 30 4320 > th dose independent sin 8 NA
501 284.03 temperature 30 4320 < th dose independent sin 9 NA
515 284.07 atmosphere 1000 10 < th dose independent rect. 4 16
571 284.22 temperature 25 4320 < th dose independent rect. 23 8
597 284.26 temperature 30 270 > th dose dependent rect. 8 3
620 284.31 atmosphere 1000 720 > th dose independent rect. 23 8
628 284.36 atmosphere 1000 270 < th dose independent rect. 5 10
639 284.40 temperature 25 4320 < th dose independent rect. 23 3
644 284.43 temperature 30 270 > th dose independent rect. 16 20
654 284.47 temperature 30 1440 > th dose independent rect. 16 1
663 284.52 temperature 30 1440 < th dose independent rect. 16 1
708 284.66 temperature 25 4320 < th dose independent rect. 3 1
717 284.70 atmosphere 1000 270 < th dose independent rect. 5 12
744 284.76 atmosphere 1000 270 > th dose independent rect. 3 23
863 285.11 atmosphere 1000 10 < th dose independent rect. 4 10
871 285.14 temperature 25 4320 < th dose independent rect. 1 1
898 285.18 temperature 20 90 < th dose dependent rect. 2 1
927 285.22 temperature 25 4320 > th dose dependent rect. 6 1
989 285.31 temperature 25 4320 > th dose independent rect. 2 1