BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0410500 Os09g0410500|Os09g0410500
(258 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0410500 Similar to SfCYC2 protein (Fragment) 333 7e-92
Os08g0432300 121 6e-28
Os03g0706500 TCP transcription factor family protein 98 7e-21
Os03g0785800 Similar to Transcription factor PCF6 (Fragment) 81 9e-16
Os01g0213800 Transcription factor PCF5 76 2e-14
Os07g0152000 TCP transcription factor family protein 75 7e-14
Os01g0755500 Similar to Transcription factor PCF7 (Fragment) 74 8e-14
Os01g0763200 Similar to Transcription factor PCF7 (Fragment) 72 4e-13
Os05g0513100 Similar to PlCYC4 protein (Fragment) 72 4e-13
>Os09g0410500 Similar to SfCYC2 protein (Fragment)
Length = 258
Score = 333 bits (854), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 173/243 (71%), Positives = 173/243 (71%)
Query: 16 YDHFFSGHGQFNSETLEAVLCRPPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRP 75
YDHFFSGHGQFNSETLEAVLCRPPRG KRP
Sbjct: 16 YDHFFSGHGQFNSETLEAVLCRPPRGAAADPAVPAAAAAAAVLTAARNGGGGHGRARKRP 75
Query: 76 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRL 135
FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRL
Sbjct: 76 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRL 135
Query: 136 AADPSSSSHRAAGDTRMSSAERGGDHHMXXXXXXXXXXXXXXXXXXPRGGRSAPMELGCE 195
AADPSSSSHRAAGDTRMSSAERGGDHHM PRGGRSAPMELGCE
Sbjct: 136 AADPSSSSHRAAGDTRMSSAERGGDHHMVAVGAAGSGKGDADKARGPRGGRSAPMELGCE 195
Query: 196 LGRLVPAPVLGEYYYELAEMMSNNTXXXXXXXXXXXXXXXXXXXXXFLCHYRSKKKFSIK 255
LGRLVPAPVLGEYYYELAEMMSNNT FLCHYRSKKKFSIK
Sbjct: 196 LGRLVPAPVLGEYYYELAEMMSNNTGGEGDDDGDYDDDGDFLDDSGFLCHYRSKKKFSIK 255
Query: 256 DIS 258
DIS
Sbjct: 256 DIS 258
>Os08g0432300
Length = 263
Score = 121 bits (303), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 67/120 (55%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Query: 17 DHFFSGHGQFNSETLEAVLCRPPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRPF 76
D + +GH Q + ETLEAVL +P +RPF
Sbjct: 26 DAYTAGHRQ-DEETLEAVLRQPVTTTAAAAAAVEGGGGGGGGGAGGSPAAAAAATRRRPF 84
Query: 77 RTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLA 136
RTDRHSKIRTAQGVRDRRMRLS+ VARDFFALQD+LGFDKAS+TV+WLLTQSK AI+RL
Sbjct: 85 RTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDKLGFDKASRTVEWLLTQSKHAINRLT 144
>Os03g0706500 TCP transcription factor family protein
Length = 388
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 57/77 (74%)
Query: 77 RTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLA 136
R DRHSKI TA G+RDRRMRLSLDVAR FFALQD LGFDKASKTV WLL SK AI +
Sbjct: 115 RKDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREIM 174
Query: 137 ADPSSSSHRAAGDTRMS 153
+D +SS G + +S
Sbjct: 175 SDDASSVCEEDGSSSLS 191
>Os03g0785800 Similar to Transcription factor PCF6 (Fragment)
Length = 312
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 45/57 (78%)
Query: 79 DRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRL 135
DRHSK+ TA+G+RDRR+RLS+ A F+ LQDRLGFD+ SK ++WL+ + PAID L
Sbjct: 9 DRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDTL 65
>Os01g0213800 Transcription factor PCF5
Length = 458
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 47/64 (73%)
Query: 77 RTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLA 136
R DRHSK+ TA+G RDRR+RLS A F+ +QDRLG+D+ SK VDWL+ +K AID+L
Sbjct: 89 RKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLD 148
Query: 137 ADPS 140
P+
Sbjct: 149 VLPA 152
>Os07g0152000 TCP transcription factor family protein
Length = 445
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 45/57 (78%)
Query: 79 DRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRL 135
DRHSK+ TA+G+RDRR+RLS+ A F+ LQDRLG+D+ SK ++WL+ + AID+L
Sbjct: 63 DRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAIDKL 119
>Os01g0755500 Similar to Transcription factor PCF7 (Fragment)
Length = 443
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 77 RTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRL 135
R DRHSK+ TA+G+RDRR+RL+ A F+ +QDRLG+D+ SK VDWL+ +K AID L
Sbjct: 126 RKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRNAKAAIDEL 184
>Os01g0763200 Similar to Transcription factor PCF7 (Fragment)
Length = 307
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 43/57 (75%)
Query: 79 DRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRL 135
DRHSK++T +G+RDRR+RLS+ A + LQDRLG ++ SK VDWLL ++ ID+L
Sbjct: 58 DRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKL 114
>Os05g0513100 Similar to PlCYC4 protein (Fragment)
Length = 294
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 42/57 (73%)
Query: 79 DRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRL 135
DRHSK+RT +G+RDRR+RLS+ A + LQDRLG + SK VDWL+ ++ ID+L
Sbjct: 57 DRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLINAAQAEIDKL 113
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,194,003
Number of extensions: 175509
Number of successful extensions: 419
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 415
Number of HSP's successfully gapped: 9
Length of query: 258
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 159
Effective length of database: 11,866,615
Effective search space: 1886791785
Effective search space used: 1886791785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)