BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0410500 Os09g0410500|Os09g0410500
(258 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G18550.1 | chr3:6383769-6385604 FORWARD LENGTH=434 107 9e-24
AT1G67260.1 | chr1:25168228-25169307 REVERSE LENGTH=360 92 3e-19
AT1G68800.1 | chr1:25847306-25848471 REVERSE LENGTH=357 89 3e-18
AT1G53230.1 | chr1:19850260-19851435 REVERSE LENGTH=392 81 5e-16
AT3G15030.1 | chr3:5062308-5063570 FORWARD LENGTH=421 79 3e-15
AT2G31070.1 | chr2:13220984-13222069 REVERSE LENGTH=362 76 2e-14
AT3G02150.2 | chr3:391522-392589 FORWARD LENGTH=356 70 2e-12
AT4G18390.1 | chr4:10163212-10164309 REVERSE LENGTH=366 70 2e-12
AT1G30210.1 | chr1:10628754-10629728 REVERSE LENGTH=325 69 2e-12
AT5G60970.1 | chr5:24535570-24536652 REVERSE LENGTH=361 68 5e-12
AT5G08070.1 | chr5:2584885-2585613 FORWARD LENGTH=243 63 1e-10
>AT3G18550.1 | chr3:6383769-6385604 FORWARD LENGTH=434
Length = 433
Score = 107 bits (266), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 62/77 (80%)
Query: 73 KRPFRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAI 132
K+P RTDRHSKI+TA+G RDRRMRLSLDVA++ F LQD LGFDKASKTV+WLLTQ+KP I
Sbjct: 144 KKPSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEI 203
Query: 133 DRLAADPSSSSHRAAGD 149
++A S ++GD
Sbjct: 204 IKIATTLSHHGCFSSGD 220
>AT1G67260.1 | chr1:25168228-25169307 REVERSE LENGTH=360
Length = 359
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 52/64 (81%)
Query: 73 KRPFRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAI 132
K+ + DRHSKI+TAQG+RDRR+RLS+ +AR FF LQD LGFDKASKT+DWLL +S+ AI
Sbjct: 83 KKVVKKDRHSKIQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAI 142
Query: 133 DRLA 136
+
Sbjct: 143 KEVV 146
>AT1G68800.1 | chr1:25847306-25848471 REVERSE LENGTH=357
Length = 356
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 59/86 (68%), Gaps = 14/86 (16%)
Query: 79 DRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLAAD 138
DRHSKI TAQG RDRRMRLSL +AR FF LQD LGFDKASKT++WL ++SK +I +L
Sbjct: 114 DRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKTSIKQLKE- 172
Query: 139 PSSSSHRAAGDTRMSSAERGG-DHHM 163
R++++E GG D H+
Sbjct: 173 ------------RVAASEGGGKDEHL 186
>AT1G53230.1 | chr1:19850260-19851435 REVERSE LENGTH=392
Length = 391
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 48/63 (76%)
Query: 77 RTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLA 136
R DRHSK+ TA+G RDRR+RLS A F+ +QDRLGFD+ SK VDWL+T++K AID LA
Sbjct: 49 RKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKAKSAIDDLA 108
Query: 137 ADP 139
P
Sbjct: 109 QLP 111
>AT3G15030.1 | chr3:5062308-5063570 FORWARD LENGTH=421
Length = 420
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 47/63 (74%)
Query: 77 RTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLA 136
R DRHSK+ TA+G RDRR+RLS A F+ +QDRLGFD+ SK VDWL+ ++K +ID LA
Sbjct: 45 RKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDELA 104
Query: 137 ADP 139
P
Sbjct: 105 ELP 107
>AT2G31070.1 | chr2:13220984-13222069 REVERSE LENGTH=362
Length = 361
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 46/59 (77%)
Query: 77 RTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRL 135
R DRHSK+ T++G RDRR+RLS A F+ +QDRLG+D+ SK VDWL+ ++K AID+L
Sbjct: 29 RKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKL 87
>AT3G02150.2 | chr3:391522-392589 FORWARD LENGTH=356
Length = 355
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 43/63 (68%)
Query: 79 DRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLAAD 138
DRHSK+ T +G+RDRR+RLS+ A + LQ+RLG D+ SK VDWLL +K ID L
Sbjct: 76 DRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELPPL 135
Query: 139 PSS 141
P S
Sbjct: 136 PIS 138
>AT4G18390.1 | chr4:10163212-10164309 REVERSE LENGTH=366
Length = 365
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 43/57 (75%)
Query: 79 DRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRL 135
DRHSK+ T++G RDRR+RLS+ A F+ LQDRLG+D+ SK V+WL+ ++ +I L
Sbjct: 44 DRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISEL 100
>AT1G30210.1 | chr1:10628754-10629728 REVERSE LENGTH=325
Length = 324
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 43/57 (75%)
Query: 79 DRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRL 135
DRHSK+ T++G+RDRR+RLS+ A F+ LQDRLGFD+ SK V+WL+ + +I L
Sbjct: 52 DRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDL 108
>AT5G60970.1 | chr5:24535570-24536652 REVERSE LENGTH=361
Length = 360
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 41/57 (71%)
Query: 79 DRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRL 135
DRHSK+ T +G+RDRR+RLS+ A + LQDRLG + SK +DWLL +K +D+L
Sbjct: 65 DRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAKDDVDKL 121
>AT5G08070.1 | chr5:2584885-2585613 FORWARD LENGTH=243
Length = 242
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 40/57 (70%)
Query: 79 DRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRL 135
DRHSK+ T +G+RDRR+RLS+ A + LQ+RLG + SK +DWLL +K +D L
Sbjct: 35 DRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWLLEVAKNDVDLL 91
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,719,565
Number of extensions: 96038
Number of successful extensions: 205
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 11
Length of query: 258
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 162
Effective length of database: 8,474,633
Effective search space: 1372890546
Effective search space used: 1372890546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)