Os12g0112200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os12g0112200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.95 | 0.253 | 13.3 | -0.399 | 0.0118 | 0.799 | -0.177 | -2.12 | -0.115 | 18 | 15.81 | 620 | -- | -- |
| 31.79 | 0.263 | 13.2 | -0.0278 | 0.0141 | 0.799 | -0.693 | -- | -0.013 | 19.2 | 13.96 | 643 | -- | -- |
| 28.97 | 0.251 | 13.3 | -0.411 | 0.0132 | 0.796 | -- | -2.22 | -0.121 | 0.9 | 16.16 | 587 | -- | -- |
| 32.87 | 0.267 | 13.2 | -0.00881 | 0.0313 | 0.775 | -- | -- | -0.00858 | 17 | 14.07 | 677 | -- | -- |
| 28.98 | 0.251 | 13.3 | -0.429 | -- | 0.792 | -- | -2.26 | -0.125 | -- | 16.37 | 604 | -- | -- |
| 39.54 | 0.295 | 13.2 | 0.171 | 0.212 | -- | -0.508 | -- | 0.111 | 19.7 | -- | -- | -- | -- |
| 40.27 | 0.297 | 13.2 | 0.183 | 0.211 | -- | -- | -- | 0.11 | 19.7 | -- | -- | -- | -- |
| 32.9 | 0.267 | 13.2 | -0.0121 | -- | 0.794 | -- | -- | -0.0115 | -- | 14.38 | 648 | -- | -- |
| 32.87 | 0.267 | 13.2 | -- | 0.0442 | 0.767 | -- | -- | -0.00722 | 16.8 | 13.93 | 703 | -- | -- |
| 42.68 | 0.305 | 13.2 | 0.18 | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
| 41.15 | 0.3 | 13.2 | -- | 0.21 | -- | -- | -- | 0.0897 | 19.8 | -- | -- | -- | -- |
| 32.9 | 0.267 | 13.2 | -- | -- | 0.79 | -- | -- | -0.0094 | -- | 14.13 | 648 | -- | -- |
| 43.54 | 0.308 | 13.2 | -- | -- | -- | -- | -- | 0.0871 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 7 | 28.14 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 22 | 28.32 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 41 | 28.48 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 53 | 28.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 78 | 28.65 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 84 | 28.67 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 89 | 28.69 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 107 | 28.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 133 | 28.80 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 150 | 28.84 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 211 | 28.97 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 214 | 28.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 272 | 29.04 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 368 | 29.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 373 | 29.18 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 672 | 29.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 20 |
| 931 | 29.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 16 |
| 956 | 29.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 2 |