BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0112200 Os12g0112200|Os12g0112200
(141 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0112200 205 8e-54
Os07g0137700 93 5e-20
Os01g0755500 Similar to Transcription factor PCF7 (Fragment) 74 3e-14
Os07g0152000 TCP transcription factor family protein 73 5e-14
Os03g0785800 Similar to Transcription factor PCF6 (Fragment) 72 1e-13
Os01g0763200 Similar to Transcription factor PCF7 (Fragment) 71 2e-13
Os05g0513100 Similar to PlCYC4 protein (Fragment) 70 4e-13
Os02g0747800 70 5e-13
Os01g0213800 Transcription factor PCF5 66 8e-12
>Os12g0112200
Length = 141
Score = 205 bits (522), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 104/119 (87%), Positives = 104/119 (87%)
Query: 1 MAAAWRTSRVACVVAGEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSKX 60
MAAAWRTSRVACVVAGEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSK
Sbjct: 1 MAAAWRTSRVACVVAGEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSKA 60
Query: 61 XXXXXXXXXXXXXXFLSLDCSLVLPNAAQLLTRWRRRPSSGQPSEEQARTRKATVAASP 119
FLSLDCSLVLPNAAQLLTRWRRRPSSGQPSEEQARTRKATVAASP
Sbjct: 61 IEWHIRAAAAAIDAFLSLDCSLVLPNAAQLLTRWRRRPSSGQPSEEQARTRKATVAASP 119
>Os07g0137700
Length = 209
Score = 93.2 bits (230), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 64/87 (73%)
Query: 33 RCVRLSVPMAIAFYDIQDRLGVDQPSKXXXXXXXXXXXXXXXFLSLDCSLVLPNAAQLLT 92
R +RLSVP AIAFYDIQDRLGVDQPSK SLDCS VLPNAAQLLT
Sbjct: 10 RSMRLSVPTAIAFYDIQDRLGVDQPSKAIEWLIRAAAAAIDALPSLDCSFVLPNAAQLLT 69
Query: 93 RWRRRPSSGQPSEEQARTRKATVAASP 119
R RRRPSS +PS EQARTRKAT+AASP
Sbjct: 70 RRRRRPSSRRPSTEQARTRKATMAASP 96
>Os01g0755500 Similar to Transcription factor PCF7 (Fragment)
Length = 443
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 43/59 (72%)
Query: 1 MAAAWRTSRVACVVAGEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSK 59
+A A+ R+ AG KD+HSKV T+RGLRDR VRL+ AI FYD+QDRLG D+PSK
Sbjct: 110 LATAFGAGRIVRSAAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSK 168
>Os07g0152000 TCP transcription factor family protein
Length = 445
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 42/55 (76%), Gaps = 4/55 (7%)
Query: 5 WRTSRVACVVAGEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSK 59
+R SR + G KD+HSKV T++G+RDR VRLSV AI FYD+QDRLG DQPSK
Sbjct: 53 YRVSRAS----GGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSK 103
>Os03g0785800 Similar to Transcription factor PCF6 (Fragment)
Length = 312
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 37/44 (84%)
Query: 16 GEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSK 59
G KD+HSKV T++G+RDR VRLSV AI FYD+QDRLG DQPSK
Sbjct: 6 GGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSK 49
>Os01g0763200 Similar to Transcription factor PCF7 (Fragment)
Length = 307
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 42/54 (77%), Gaps = 1/54 (1%)
Query: 6 RTSRVACVVAGEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSK 59
R RV+ V G KD+HSKV T +GLRDR VRLSVP AI YD+QDRLG++QPSK
Sbjct: 46 RIVRVSRVFGG-KDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSK 98
>Os05g0513100 Similar to PlCYC4 protein (Fragment)
Length = 294
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Query: 6 RTSRVACVVAGEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSK 59
R RV+ V G KD+HSKV T +GLRDR VRLSVP AI YD+QDRLG+ QPSK
Sbjct: 45 RIVRVSRVFGG-KDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSK 97
>Os02g0747800
Length = 215
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 28 RGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSKXXXXXXXXXXXXXXXFLSLDCSLVLPNA 87
R R RLSVP +IAFYDIQDRLGV++PSK +L L+L
Sbjct: 35 RARRTSTARLSVPTSIAFYDIQDRLGVNRPSKSIEWLI---------CAALVARLLLRPP 85
Query: 88 AQLLTRWRRRPSSGQPSEEQARTRKATVAASP 119
+ RRPSSGQPSEEQARTRKATVA SP
Sbjct: 86 QRRPAPHPRRPSSGQPSEEQARTRKATVAVSP 117
>Os01g0213800 Transcription factor PCF5
Length = 458
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%)
Query: 16 GEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSK 59
G KD+HSKV T+RG RDR VRLS AI FYD+QDRLG D+PSK
Sbjct: 88 GRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSK 131
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.129 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,530,147
Number of extensions: 104322
Number of successful extensions: 308
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 9
Length of query: 141
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 50
Effective length of database: 12,284,327
Effective search space: 614216350
Effective search space used: 614216350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)