BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0112200 Os12g0112200|Os12g0112200
(141 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G30210.1 | chr1:10628754-10629728 REVERSE LENGTH=325 75 1e-14
AT5G60970.1 | chr5:24535570-24536652 REVERSE LENGTH=361 72 7e-14
AT3G02150.2 | chr3:391522-392589 FORWARD LENGTH=356 72 9e-14
AT4G18390.1 | chr4:10163212-10164309 REVERSE LENGTH=366 72 1e-13
AT1G53230.1 | chr1:19850260-19851435 REVERSE LENGTH=392 69 8e-13
AT2G31070.1 | chr2:13220984-13222069 REVERSE LENGTH=362 68 2e-12
AT3G15030.1 | chr3:5062308-5063570 FORWARD LENGTH=421 65 1e-11
AT5G08070.1 | chr5:2584885-2585613 FORWARD LENGTH=243 65 1e-11
AT1G67260.1 | chr1:25168228-25169307 REVERSE LENGTH=360 56 8e-09
AT1G68800.1 | chr1:25847306-25848471 REVERSE LENGTH=357 50 3e-07
>AT1G30210.1 | chr1:10628754-10629728 REVERSE LENGTH=325
Length = 324
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 44/55 (80%), Gaps = 2/55 (3%)
Query: 7 TSRVACV--VAGEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSK 59
+SR+ V +G KD+HSKV+TS+GLRDR +RLSV AI FYD+QDRLG DQPSK
Sbjct: 38 SSRIIRVSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSK 92
>AT5G60970.1 | chr5:24535570-24536652 REVERSE LENGTH=361
Length = 360
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Query: 2 AAAWRTSRVACV--VAGEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSK 59
+A+R R+ V G KD+HSKV T RGLRDR +RLSVP AI YD+QDRLG+ QPSK
Sbjct: 46 TSAFRNPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSK 105
>AT3G02150.2 | chr3:391522-392589 FORWARD LENGTH=356
Length = 355
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 37/44 (84%)
Query: 16 GEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSK 59
G KD+HSKV T RGLRDR VRLSVP AI YD+Q+RLGVDQPSK
Sbjct: 73 GGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSK 116
>AT4G18390.1 | chr4:10163212-10164309 REVERSE LENGTH=366
Length = 365
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 43/56 (76%), Gaps = 2/56 (3%)
Query: 6 RTSRVACV--VAGEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSK 59
+SR+ V +G KD+HSKV+TS+G RDR VRLSV A+ FYD+QDRLG DQPSK
Sbjct: 29 NSSRIIRVSRASGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSK 84
>AT1G53230.1 | chr1:19850260-19851435 REVERSE LENGTH=392
Length = 391
Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%)
Query: 16 GEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSK 59
G KD+HSKV T++G RDR VRLS P AI FYD+QDRLG D+PSK
Sbjct: 48 GRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSK 91
>AT2G31070.1 | chr2:13220984-13222069 REVERSE LENGTH=362
Length = 361
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 35/45 (77%)
Query: 15 AGEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSK 59
G KD+HSKV TS+G RDR VRLS AI FYD+QDRLG D+PSK
Sbjct: 27 TGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSK 71
>AT3G15030.1 | chr3:5062308-5063570 FORWARD LENGTH=421
Length = 420
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 35/44 (79%)
Query: 16 GEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSK 59
G KD+HSKV T++G RDR VRLS AI FYD+QDRLG D+PSK
Sbjct: 44 GRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSK 87
>AT5G08070.1 | chr5:2584885-2585613 FORWARD LENGTH=243
Length = 242
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 5 WRTSRVACV--VAGEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSK 59
W R+ V G KD+HSKV T RGLRDR +RLSV AI YD+Q+RLG+ QPSK
Sbjct: 19 WNNPRIVRVSRAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSK 75
>AT1G67260.1 | chr1:25168228-25169307 REVERSE LENGTH=360
Length = 359
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 35/43 (81%)
Query: 17 EKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSK 59
+KD+HSK+ T++G+RDR VRLS+ +A F+D+QD LG D+ SK
Sbjct: 87 KKDRHSKIQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASK 129
>AT1G68800.1 | chr1:25847306-25848471 REVERSE LENGTH=357
Length = 356
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 33/42 (78%)
Query: 18 KDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSK 59
+D+HSK+ T++G RDR +RLS+ +A F+D+QD LG D+ SK
Sbjct: 113 RDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASK 154
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.129 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,076,775
Number of extensions: 57269
Number of successful extensions: 120
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 10
Length of query: 141
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 52
Effective length of database: 8,666,545
Effective search space: 450660340
Effective search space used: 450660340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 106 (45.4 bits)