BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0755500 Os01g0755500|AB071807
(443 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G15030.1 | chr3:5062308-5063570 FORWARD LENGTH=421 138 6e-33
AT2G31070.1 | chr2:13220984-13222069 REVERSE LENGTH=362 115 6e-26
AT1G53230.1 | chr1:19850260-19851435 REVERSE LENGTH=392 114 9e-26
AT3G02150.2 | chr3:391522-392589 FORWARD LENGTH=356 102 6e-22
AT4G18390.1 | chr4:10163212-10164309 REVERSE LENGTH=366 99 5e-21
AT5G60970.1 | chr5:24535570-24536652 REVERSE LENGTH=361 99 6e-21
AT1G30210.1 | chr1:10628754-10629728 REVERSE LENGTH=325 96 3e-20
AT5G08070.1 | chr5:2584885-2585613 FORWARD LENGTH=243 94 1e-19
AT1G68800.1 | chr1:25847306-25848471 REVERSE LENGTH=357 81 1e-15
AT1G67260.1 | chr1:25168228-25169307 REVERSE LENGTH=360 79 5e-15
AT3G18550.1 | chr3:6383769-6385604 FORWARD LENGTH=434 66 3e-11
>AT3G15030.1 | chr3:5062308-5063570 FORWARD LENGTH=421
Length = 420
Score = 138 bits (347), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 114/326 (34%), Positives = 147/326 (45%), Gaps = 66/326 (20%)
Query: 116 AGRIVRSAAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMR 175
G IVRS GRKDRHSKVCTA+G RDRRVRL+AHTAI+FYDVQDRLG+DRPSKAVDWL++
Sbjct: 36 GGHIVRST-GRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIK 94
Query: 176 NAKAAIDELPD-----------------RXXXXXXXXXXXXXXXXXXXXXXXXSYGFGNX 218
AK +IDEL + + FG
Sbjct: 95 KAKTSIDELAELPPWNPADAIRLAAANAKPRRTTAKTQISPSPPPPQQQQQQQQLQFGVG 154
Query: 219 XXXXXXXXXXXXXXXFLPHSLGADRVSDSVKSLFP---XXXXXXXXXXXXHDEYRGSPPD 275
FLP S+ +D ++D++KS FP H+ + PPD
Sbjct: 155 FNGGGAEHPSNNESSFLPPSMDSDSIADTIKSFFPVIGSSTEAPSNHNLMHNYHHQHPPD 214
Query: 276 LLSRTTSNQQPQELCLTLQS---------------------NQHQIFSHVSSNHHGMISS 314
LLSRT N Q Q+L L+LQS ++ +F + SN G +S
Sbjct: 215 LLSRT--NSQNQDLRLSLQSFPDGPPSLLHHQHHHHTSASASEPTLF-YGQSNPLGFDTS 271
Query: 315 AGVPGWPDHS------QRMQAWHAPENSTXXXXXXXXXXXYMFAMPS------RQGLDQS 362
+ W S QR+ AW++ ++FA P+ + L QS
Sbjct: 272 S----WEQQSSEFGRIQRLVAWNS--GGGGGATDTGNGGGFLFAPPTPSTTSFQPVLGQS 325
Query: 363 -QLFSHGEPLQSSGRGWASARAWLDP 387
QL+S PLQSS RAW DP
Sbjct: 326 QQLYSQRGPLQSSYS--PMIRAWFDP 349
>AT2G31070.1 | chr2:13220984-13222069 REVERSE LENGTH=362
Length = 361
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 61/69 (88%), Gaps = 1/69 (1%)
Query: 116 AGRIVRSAAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMR 175
G I+R A GRKDRHSKV T++G RDRRVRL+AHTAI+FYDVQDRLGYDRPSKAVDWL++
Sbjct: 20 GGHIIR-ATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIK 78
Query: 176 NAKAAIDEL 184
AK AID+L
Sbjct: 79 KAKTAIDKL 87
>AT1G53230.1 | chr1:19850260-19851435 REVERSE LENGTH=392
Length = 391
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 54/69 (78%), Positives = 61/69 (88%), Gaps = 1/69 (1%)
Query: 116 AGRIVRSAAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMR 175
G IVRS GRKDRHSKVCTA+G RDRRVRL+A TAI+FYDVQDRLG+DRPSKAVDWL+
Sbjct: 40 GGHIVRST-GRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLIT 98
Query: 176 NAKAAIDEL 184
AK+AID+L
Sbjct: 99 KAKSAIDDL 107
>AT3G02150.2 | chr3:391522-392589 FORWARD LENGTH=356
Length = 355
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 56/70 (80%), Gaps = 2/70 (2%)
Query: 118 RIVRS--AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMR 175
RIVR A G KDRHSKVCT RGLRDRRVRL+ TAI+ YD+Q+RLG D+PSKAVDWL+
Sbjct: 64 RIVRVSRAFGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLD 123
Query: 176 NAKAAIDELP 185
AK IDELP
Sbjct: 124 AAKEEIDELP 133
>AT4G18390.1 | chr4:10163212-10164309 REVERSE LENGTH=366
Length = 365
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 60/72 (83%), Gaps = 2/72 (2%)
Query: 116 AGRIVRS--AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWL 173
+ RI+R A+G KDRHSKV T++G RDRRVRL+ TA++FYD+QDRLGYD+PSKAV+WL
Sbjct: 30 SSRIIRVSRASGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWL 89
Query: 174 MRNAKAAIDELP 185
++ A+ +I ELP
Sbjct: 90 IKAAEDSISELP 101
>AT5G60970.1 | chr5:24535570-24536652 REVERSE LENGTH=361
Length = 360
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 57/77 (74%), Gaps = 2/77 (2%)
Query: 111 ATAFGAGRIVRSA--AGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSK 168
+AF RIVR + G KDRHSKVCT RGLRDRR+RL+ TAI+ YD+QDRLG +PSK
Sbjct: 46 TSAFRNPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSK 105
Query: 169 AVDWLMRNAKAAIDELP 185
+DWL+ AK +D+LP
Sbjct: 106 VIDWLLEAAKDDVDKLP 122
>AT1G30210.1 | chr1:10628754-10629728 REVERSE LENGTH=325
Length = 324
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 59/72 (81%), Gaps = 2/72 (2%)
Query: 116 AGRIVR--SAAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWL 173
+ RI+R A+G KDRHSKV T++GLRDRR+RL+ TAI+FYD+QDRLG+D+PSKAV+WL
Sbjct: 38 SSRIIRVSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWL 97
Query: 174 MRNAKAAIDELP 185
+ A +I +LP
Sbjct: 98 INAASDSITDLP 109
>AT5G08070.1 | chr5:2584885-2585613 FORWARD LENGTH=243
Length = 242
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Query: 118 RIVRS--AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMR 175
RIVR A G KDRHSKVCT RGLRDRR+RL+ TAI+ YD+Q+RLG +PSK +DWL+
Sbjct: 23 RIVRVSRAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWLLE 82
Query: 176 NAKAAIDELP 185
AK +D LP
Sbjct: 83 VAKNDVDLLP 92
>AT1G68800.1 | chr1:25847306-25848471 REVERSE LENGTH=357
Length = 356
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 49/67 (73%)
Query: 121 RSAAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRNAKAA 180
R ++DRHSK+CTA+G RDRR+RL+ A +F+D+QD LG+D+ SK ++WL +K +
Sbjct: 107 RRTVKKRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKTS 166
Query: 181 IDELPDR 187
I +L +R
Sbjct: 167 IKQLKER 173
>AT1G67260.1 | chr1:25168228-25169307 REVERSE LENGTH=360
Length = 359
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 48/59 (81%)
Query: 126 RKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRNAKAAIDEL 184
+KDRHSK+ TA+G+RDRRVRL+ A +F+D+QD LG+D+ SK +DWL++ ++ AI E+
Sbjct: 87 KKDRHSKIQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAIKEV 145
>AT3G18550.1 | chr3:6383769-6385604 FORWARD LENGTH=434
Length = 433
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 39/57 (68%)
Query: 125 GRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRNAKAAI 181
R DRHSK+ TA+G RDRR+RL+ A + +QD LG+D+ SK V+WL+ AK I
Sbjct: 147 SRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEI 203
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.130 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,807,983
Number of extensions: 205039
Number of successful extensions: 449
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 449
Number of HSP's successfully gapped: 12
Length of query: 443
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 341
Effective length of database: 8,310,137
Effective search space: 2833756717
Effective search space used: 2833756717
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)