BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0213800 Os01g0213800|AB071805
(458 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G15030.1 | chr3:5062308-5063570 FORWARD LENGTH=421 189 4e-48
AT1G53230.1 | chr1:19850260-19851435 REVERSE LENGTH=392 167 1e-41
AT2G31070.1 | chr2:13220984-13222069 REVERSE LENGTH=362 145 6e-35
AT4G18390.1 | chr4:10163212-10164309 REVERSE LENGTH=366 105 4e-23
AT3G02150.2 | chr3:391522-392589 FORWARD LENGTH=356 99 3e-21
AT5G60970.1 | chr5:24535570-24536652 REVERSE LENGTH=361 99 7e-21
AT1G30210.1 | chr1:10628754-10629728 REVERSE LENGTH=325 97 2e-20
AT5G08070.1 | chr5:2584885-2585613 FORWARD LENGTH=243 92 6e-19
AT1G68800.1 | chr1:25847306-25848471 REVERSE LENGTH=357 85 8e-17
AT1G67260.1 | chr1:25168228-25169307 REVERSE LENGTH=360 81 1e-15
AT3G18550.1 | chr3:6383769-6385604 FORWARD LENGTH=434 69 4e-12
>AT3G15030.1 | chr3:5062308-5063570 FORWARD LENGTH=421
Length = 420
Score = 189 bits (479), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 154/328 (46%), Gaps = 26/328 (7%)
Query: 74 EIVAVQGGHIVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAV 133
EIV VQGGHIVRSTGRKDRHSKVCTA+GPRDRRVRLSAHTAIQFYDVQDRLG+DRPSKAV
Sbjct: 30 EIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAV 89
Query: 134 DWLIKNAKDAIDKLDVLPAWQPTXXXXXXXXXXXPPSSSTHPDSAENSDDQAQAITVAHT 193
DWLIK AK +ID+L LP W P P ++ + + Q
Sbjct: 90 DWLIKKAKTSIDELAELPPWNPADAIRLAAANAKPRRTTAKTQISPSPPPPQQQQQQQQL 149
Query: 194 AF--DFAGGGS-----GGTSFLPPSLDSDAIADTIKSFFPMXXXXXXXXXXXXXXXXXXX 246
F F GGG+ +SFLPPS+DSD+IADTIKSFFP+
Sbjct: 150 QFGVGFNGGGAEHPSNNESSFLPPSMDSDSIADTIKSFFPVIGSSTEAPSNHNLMHNYH- 208
Query: 247 XXFQSYTPDLLSRTGXXXXXXXXXXXXXPDPMFXXXXXXXXXXXXXXXXXXXXALFSGAA 306
+ PDLLSRT PD LF G +
Sbjct: 209 ---HQHPPDLLSRTNSQNQDLRLSLQSFPDG--PPSLLHHQHHHHTSASASEPTLFYGQS 263
Query: 307 NYSFGGGAMWATEQQAQN----QRMLPWN----VPDPGGGGGAAYLFNVXXXXXXXXXXX 358
N + W EQQ+ QR++ WN G G +LF
Sbjct: 264 NPLGFDTSSW--EQQSSEFGRIQRLVAWNSGGGGGATDTGNGGGFLF---APPTPSTTSF 318
Query: 359 XXXXXXXXXFFFQRGPLQSSNQPSERGW 386
+ QRGPLQSS P R W
Sbjct: 319 QPVLGQSQQLYSQRGPLQSSYSPMIRAW 346
>AT1G53230.1 | chr1:19850260-19851435 REVERSE LENGTH=392
Length = 391
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/154 (57%), Positives = 99/154 (64%), Gaps = 4/154 (2%)
Query: 74 EIVAVQGGHIVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAV 133
EIV VQGGHIVRSTGRKDRHSKVCTA+GPRDRRVRLSA TAIQFYDVQDRLG+DRPSKAV
Sbjct: 34 EIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAV 93
Query: 134 DWLIKNAKDAIDKLDVLPAWQPTXXXXXXXXXXXPPSSSTHPDSAENSDDQAQAITVAHT 193
DWLI AK AID L LP W P +++ P +
Sbjct: 94 DWLITKAKSAIDDLAQLPPWNPADTLRQHAAA----AANAKPRKTKTLISPPPPQPEETE 149
Query: 194 AFDFAGGGSGGTSFLPPSLDSDAIADTIKSFFPM 227
+SFLP S+DSD+IADTIKSFFP+
Sbjct: 150 HHRIGEEEDNESSFLPASMDSDSIADTIKSFFPV 183
>AT2G31070.1 | chr2:13220984-13222069 REVERSE LENGTH=362
Length = 361
Score = 145 bits (365), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 66/76 (86%), Positives = 72/76 (94%)
Query: 74 EIVAVQGGHIVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAV 133
EIV VQGGHI+R+TGRKDRHSKV T++GPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAV
Sbjct: 14 EIVEVQGGHIIRATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAV 73
Query: 134 DWLIKNAKDAIDKLDV 149
DWLIK AK AIDKL++
Sbjct: 74 DWLIKKAKTAIDKLEL 89
>AT4G18390.1 | chr4:10163212-10164309 REVERSE LENGTH=366
Length = 365
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 59/68 (86%)
Query: 83 IVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKD 142
+ R++G KDRHSKV T++GPRDRRVRLS TA+QFYD+QDRLGYD+PSKAV+WLIK A+D
Sbjct: 36 VSRASGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAED 95
Query: 143 AIDKLDVL 150
+I +L L
Sbjct: 96 SISELPSL 103
>AT3G02150.2 | chr3:391522-392589 FORWARD LENGTH=356
Length = 355
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 55/69 (79%)
Query: 83 IVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKD 142
+ R+ G KDRHSKVCT RG RDRRVRLS TAIQ YD+Q+RLG D+PSKAVDWL+ AK+
Sbjct: 68 VSRAFGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKE 127
Query: 143 AIDKLDVLP 151
ID+L LP
Sbjct: 128 EIDELPPLP 136
>AT5G60970.1 | chr5:24535570-24536652 REVERSE LENGTH=361
Length = 360
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 52/65 (80%)
Query: 83 IVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKD 142
+ R+ G KDRHSKVCT RG RDRR+RLS TAIQ YD+QDRLG +PSK +DWL++ AKD
Sbjct: 57 VSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAKD 116
Query: 143 AIDKL 147
+DKL
Sbjct: 117 DVDKL 121
>AT1G30210.1 | chr1:10628754-10629728 REVERSE LENGTH=325
Length = 324
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 56/68 (82%)
Query: 83 IVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKD 142
+ R++G KDRHSKV T++G RDRR+RLS TAIQFYD+QDRLG+D+PSKAV+WLI A D
Sbjct: 44 VSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASD 103
Query: 143 AIDKLDVL 150
+I L +L
Sbjct: 104 SITDLPLL 111
>AT5G08070.1 | chr5:2584885-2585613 FORWARD LENGTH=243
Length = 242
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 51/65 (78%)
Query: 83 IVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKD 142
+ R+ G KDRHSKVCT RG RDRR+RLS TAIQ YD+Q+RLG +PSK +DWL++ AK+
Sbjct: 27 VSRAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWLLEVAKN 86
Query: 143 AIDKL 147
+D L
Sbjct: 87 DVDLL 91
>AT1G68800.1 | chr1:25847306-25848471 REVERSE LENGTH=357
Length = 356
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 49/63 (77%)
Query: 85 RSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAI 144
R+ ++DRHSK+CTA+GPRDRR+RLS A +F+D+QD LG+D+ SK ++WL +K +I
Sbjct: 108 RTVKKRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKTSI 167
Query: 145 DKL 147
+L
Sbjct: 168 KQL 170
>AT1G67260.1 | chr1:25168228-25169307 REVERSE LENGTH=360
Length = 359
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 49/64 (76%)
Query: 84 VRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDA 143
++ +KDRHSK+ TA+G RDRRVRLS A QF+D+QD LG+D+ SK +DWL+K ++ A
Sbjct: 82 IKKVVKKDRHSKIQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKA 141
Query: 144 IDKL 147
I ++
Sbjct: 142 IKEV 145
>AT3G18550.1 | chr3:6383769-6385604 FORWARD LENGTH=434
Length = 433
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 88 GRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKL 147
R DRHSK+ TA+G RDRR+RLS A + + +QD LG+D+ SK V+WL+ AK I K+
Sbjct: 147 SRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKI 206
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,441,514
Number of extensions: 264258
Number of successful extensions: 780
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 782
Number of HSP's successfully gapped: 11
Length of query: 458
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 356
Effective length of database: 8,310,137
Effective search space: 2958408772
Effective search space used: 2958408772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)