BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0685100 Os06g0685100|Os06g0685100
(683 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0685100 Similar to COBRA-like protein 10 precursor 1170 0.0
Os07g0690900 Phytochelatin synthetase-like conserved region... 505 e-143
Os03g0301200 Similar to COBRA-like protein 7 precursor 266 5e-71
Os03g0416300 Similar to Phytochelatin synthetase (Fragment) 113 4e-25
Os07g0604300 Similar to Phytochelatin synthetase (Fragment) 112 6e-25
AK102170 88 3e-17
Os10g0497700 Similar to Phytochelatin synthetase 86 1e-16
Os05g0386800 Similar to Phytochelatin synthetase-like prote... 85 1e-16
Os03g0416200 BRITTLE CULM1 83 7e-16
>Os06g0685100 Similar to COBRA-like protein 10 precursor
Length = 683
Score = 1170 bits (3026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/656 (87%), Positives = 574/656 (87%)
Query: 28 QDYNNXXXXXXXXXXXXXKPSFKAQEACNGAFLTYTFTEREKEYPRXXXXXXXXXXXXXX 87
QDYNN KPSFKAQEACNGAFLTYTFTEREKEYPR
Sbjct: 28 QDYNNGGGGDGEDEEEEEKPSFKAQEACNGAFLTYTFTEREKEYPRTKNATAQAFAFKAT 87
Query: 88 XXVLNTMTEDLKAWQMFVGFQHKEILVTVGGAVLLDGTDLPANVSGGVTFAGYPMANLLN 147
VLNTMTEDLKAWQMFVGFQHKEILVTVGGAVLLDGTDLPANVSGGVTFAGYPMANLLN
Sbjct: 88 ATVLNTMTEDLKAWQMFVGFQHKEILVTVGGAVLLDGTDLPANVSGGVTFAGYPMANLLN 147
Query: 148 SIETAGDLTQIQAQIDITGTQFGVKPPTAPMPRTIKLSNPGFRCPKPTHKQSVMYVCCVK 207
SIETAGDLTQIQAQIDITGTQFGVKPPTAPMPRTIKLSNPGFRCPKPTHKQSVMYVCCVK
Sbjct: 148 SIETAGDLTQIQAQIDITGTQFGVKPPTAPMPRTIKLSNPGFRCPKPTHKQSVMYVCCVK 207
Query: 208 DPKFKAKKVNTTTRYLPRQKADLTIAYDVLQAFGNNYMVQVTIDNWSPIGRLDNWNLTWE 267
DPKFKAKKVNTTTRYLPRQKADLTIAYDVLQAFGNNYMVQVTIDNWSPIGRLDNWNLTWE
Sbjct: 208 DPKFKAKKVNTTTRYLPRQKADLTIAYDVLQAFGNNYMVQVTIDNWSPIGRLDNWNLTWE 267
Query: 268 WKRGEFIYKMRGAYTLNKEGPACVYSPAAGYYKDFDFTPAYSCEKRPIVVDLPPEREKDK 327
WKRGEFIYKMRGAYTLNKEGPACVYSPAAGYYKDFDFTPAYSCEKRPIVVDLPPEREKDK
Sbjct: 268 WKRGEFIYKMRGAYTLNKEGPACVYSPAAGYYKDFDFTPAYSCEKRPIVVDLPPEREKDK 327
Query: 328 DVGNIPFCCKNGTLLPPTMDESKSRAVFQMQVFKLPPDLNRTALYPPQNWKIIGKLNPQY 387
DVGNIPFCCKNGTLLPPTMDESKSRAVFQMQVFKLPPDLNRTALYPPQNWKIIGKLNPQY
Sbjct: 328 DVGNIPFCCKNGTLLPPTMDESKSRAVFQMQVFKLPPDLNRTALYPPQNWKIIGKLNPQY 387
Query: 388 ACRQPVRVSPVVFPDQTGLMSSTPAVASWQVACNITRPKRRAAKCCVSFSAYYDDSVVPX 447
ACRQPVRVSPVVFPDQTGLMSSTPAVASWQVACNITRPKRRAAKCCVSFSAYYDDSVVP
Sbjct: 388 ACRQPVRVSPVVFPDQTGLMSSTPAVASWQVACNITRPKRRAAKCCVSFSAYYDDSVVPC 447
Query: 448 XXXXXXXXXXXXXXXXXXXXXXXXXXXPLPPEALLIPFDNRTAKGRAWAKIKHRRVPNPM 507
PLPPEALLIPFDNRTAKGRAWAKIKHRRVPNPM
Sbjct: 448 NTCACGCGGGGGGGNDTATCDADARATPLPPEALLIPFDNRTAKGRAWAKIKHRRVPNPM 507
Query: 508 PCGDNCGLSVNWHIMNNYKSGWAARITIFNWQDYTFKDWFAAVTMRDHYSGYENVYSFNG 567
PCGDNCGLSVNWHIMNNYKSGWAARITIFNWQDYTFKDWFAAVTMRDHYSGYENVYSFNG
Sbjct: 508 PCGDNCGLSVNWHIMNNYKSGWAARITIFNWQDYTFKDWFAAVTMRDHYSGYENVYSFNG 567
Query: 568 TKMGAPFNNSIFMQGLPGLTYLEPITDGRTPEDPRVPGKQQSVISFSRKDAPNVNIAKGE 627
TKMGAPFNNSIFMQGLPGLTYLEPITDGRTPEDPRVPGKQQSVISFSRKDAPNVNIAKGE
Sbjct: 568 TKMGAPFNNSIFMQGLPGLTYLEPITDGRTPEDPRVPGKQQSVISFSRKDAPNVNIAKGE 627
Query: 628 GFPKRLYFDGEECALPDTIPKPXXXXXXXXXXXXLGQIXXXXXXXXXXXXXDSLCL 683
GFPKRLYFDGEECALPDTIPKP LGQI DSLCL
Sbjct: 628 GFPKRLYFDGEECALPDTIPKPSSAHRRAAAAASLGQIVMAVVLVMVVAVVDSLCL 683
>Os07g0690900 Phytochelatin synthetase-like conserved region family protein
Length = 675
Score = 505 bits (1301), Expect = e-143, Method: Compositional matrix adjust.
Identities = 259/610 (42%), Positives = 357/610 (58%), Gaps = 23/610 (3%)
Query: 55 CNGAFLTYTFTEREKEYPRXXXXXXXXX--XXXXXXXVLNTMTEDLKAWQMFVGFQHKEI 112
CNG LTY R+K P VLN+ T L++W + + F H+EI
Sbjct: 45 CNGILLTYNLDRRDKIRPFVAAPEADAQPYSFRATATVLNSGTRALRSWTLRLTFHHREI 104
Query: 113 LVTVGGAVLLDGTDLPANVSG--GVTFAGYPMANLLNSIETAGDLTQIQAQIDITGTQFG 170
LV + GAVL G DLP N + +F+GYP +LL I TAGDLT+IQA +++ GT F
Sbjct: 105 LVQLDGAVLTSGADLPYNTTADNATSFSGYPQTDLLTPIATAGDLTKIQATLNLVGTLFA 164
Query: 171 VKPPTAPMPRTIKLSNPGFRCPKPTH-KQSVMYVCCVKDPKFKAKK------VNTTTRYL 223
PP P+P + L++P + CP + S + CC+ P+ A T YL
Sbjct: 165 GPPPYVPLPSALSLADPSYTCPPAINVSTSTLSTCCILTPEAAANASAGDLDAGRATSYL 224
Query: 224 PRQKADLTIAYDVLQAFGNNYMVQVTIDNWSPIGRLDNWNLTWEWKRGEFIYKMRGAYTL 283
PR DL I YDVLQA Y+ QVT++N + +GRLD W L+WEW RGEFI MRGAY
Sbjct: 225 PRGAGDLVITYDVLQAHETTYLAQVTLENDALLGRLDGWELSWEWLRGEFISSMRGAYPR 284
Query: 284 NKEGPACVYSPAAGYYKDFDFTPAYSCEKRPIVVDLPPEREKDKDVGNIPFCCKNGTLLP 343
CVY +YK DF+ +C+++P V+DLPP R D+D+G I CC+NGT+LP
Sbjct: 285 QVGATDCVYGAQGAFYKGLDFSKVLNCDRKPAVLDLPPSRRGDEDIGGIDHCCRNGTMLP 344
Query: 344 PTMDESKSRAVFQMQVFKLPPDLNRTALYPPQNWKIIGK--LNPQYACRQPVRVSPVVFP 401
++D ++S++ FQM+V+K+PPDLNRT LY P N+++ G LNP+YAC QPVRV+P P
Sbjct: 345 KSVDAAQSKSAFQMEVYKMPPDLNRTKLYAPANFRVSGASPLNPEYACGQPVRVTPTELP 404
Query: 402 DQTGLMSSTPAVASWQVACNIT-RPKRRAAKCCVSFSAYYDDSVVPXXXXXXXXXXXXXX 460
D +GL S+T A+A+WQV CN+T P + CCV+FSA+Y++SV+P
Sbjct: 405 DPSGLASTTLALATWQVVCNMTAAPPSKPPSCCVTFSAFYNESVIPCRTCACGCPASPAA 464
Query: 461 XXXXXXXXXXXXXXPLPPEALLIPFDNRTAKGRAWAKIKHRRVPNPMPCGDNCGLSVNWH 520
LPP ALL+PF+ R + WA K VP PMPCGD+CG+S+NWH
Sbjct: 465 ACSTTAPSML-----LPPYALLMPFERRGREAVWWAGEKRLGVPRPMPCGDSCGVSINWH 519
Query: 521 IMNNYKSGWAARITIFNWQDYTFKDWFAAVTM-RDHYSGYENVYSFNGTKMGAPFNNSIF 579
+ +Y GW+AR T+FNW+ +WF AV M + Y G+E ++FN T MG I
Sbjct: 520 VATDYAGGWSARATLFNWEGADVAEWFLAVAMEKQAYDGFEQAFTFNATAMGNG-TTMIL 578
Query: 580 MQGLPGLTYLEPITDGRTPEDPRVPGKQQSVISFSRK-DAPNVNIAKGEGFPKRLYFDGE 638
M+G G YL+ ++ + P V GKQQSV+ F++K +++ G+GFP R+ F+G
Sbjct: 579 MKGREGFQYLKRESNMSGVDYP-VAGKQQSVLLFTKKRSGGGIDVVGGDGFPTRVLFNGH 637
Query: 639 ECALPDTIPK 648
ECA+P IP
Sbjct: 638 ECAMPQRIPS 647
>Os03g0301200 Similar to COBRA-like protein 7 precursor
Length = 297
Score = 266 bits (679), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 127/257 (49%), Positives = 165/257 (64%), Gaps = 8/257 (3%)
Query: 391 QPVRVSPVVFPDQTGLMSSTPAVASWQVACNITRPKRRAAKCCVSFSAYYDDSVVPXXXX 450
+P + P FPD +GL S+T A+A+WQV CNIT K KCCV+FSAYY+DSV+P
Sbjct: 19 EPDKALPTEFPDPSGLDSTTLAIATWQVVCNITTSKGAKPKCCVTFSAYYNDSVIPCNTC 78
Query: 451 XXXXXXXXXXXXXXXXXXXXXXXXPLPPEALLIPFDNRTAKGRAWAKIKHRRVPNPMPCG 510
LPPEALL+PFDNRT K AWA++KH VP PMPCG
Sbjct: 79 ACGCPSNQRGPTCSTTAQSML----LPPEALLVPFDNRTQKALAWAELKHYNVPKPMPCG 134
Query: 511 DNCGLSVNWHIMNNYKSGWAARITIFNWQDYTFKDWFAAVTMRDHYSGYENVYSFNGTKM 570
D CG+S+NWHI +Y GW+AR+T+FNW + +WFAA+ M Y G+E YSFN T +
Sbjct: 135 DYCGVSINWHISTDYNKGWSARMTLFNWDNVDLANWFAAIVMDKAYDGFEKAYSFNSTSV 194
Query: 571 GAPFNNSIFMQGLPGLTYLEPITDGRTPEDPRVPGKQQSVISFSRKDAPNVNIAKGEGFP 630
G N+IFMQGL GL YL T+ + D VPGKQQSV+SF++K P +N+ G+GFP
Sbjct: 195 G---KNTIFMQGLEGLNYLVKQTN-MSGSDYLVPGKQQSVLSFTKKLTPGINVVAGDGFP 250
Query: 631 KRLYFDGEECALPDTIP 647
+++F+G+ECA+P IP
Sbjct: 251 SKVFFNGDECAMPQRIP 267
>Os03g0416300 Similar to Phytochelatin synthetase (Fragment)
Length = 458
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 102/422 (24%), Positives = 159/422 (37%), Gaps = 51/422 (12%)
Query: 228 ADLTIAYDVLQAFGNNYMVQVTIDNWSPIGRLD--NWNLTWEWKRGEFIYKMRGAYTLNK 285
++TI +D+ Q + Y+ VTI N+ + W+L W W + E I+ M G +
Sbjct: 37 GNITIKWDITQWTPDGYVAVVTIYNFQKYRHIQAPGWSLGWAWAKKEIIWSMAGGQATEQ 96
Query: 286 EGPACVYSPAAGYYKDFDFTPAYSCEKRPIVVDLPPEREKDKDVGNIPFCCKNGTLLPPT 345
G F + C++ P VVDL P + GN CCK G L
Sbjct: 97 -----------GDCSAFKANIPHCCKRDPRVVDLVPGAPYNMQFGN---CCKGGVLTSWV 142
Query: 346 MDESKSRAVFQMQVFKLPPDLNRTALYPPQNWKIIGKLNPQYACRQPVRVSPVVFPDQTG 405
D + A FQ+ V + + P+N+ + P Y+C V P
Sbjct: 143 QDPLNAVASFQITVGH--SGTSNKTVKAPKNFTLKAP-GPGYSCGLAQEVKPPTRFISLD 199
Query: 406 LMSSTPAVASWQVACNITR-PKRRAAKCCVSFSAYYDDSVVPXXXXXXXXXXXXXXXXXX 464
+T A +W V C ++ +RA CCVS S++Y++++V
Sbjct: 200 GRRTTQAHVTWNVTCTYSQFVAQRAPTCCVSLSSFYNETIVNCPKCACGCQNKKPGSCVE 259
Query: 465 XXXXXXXXXXPLPPEALLIPFDNRTAKGRAWAKIKHRRVPNPMPCGDNCGLSVNWHIMNN 524
P + L P T C + V+WH+ N
Sbjct: 260 GNSPYLASVVNGPGKGSLTPLVQCTPH--------------------MCPIRVHWHVKLN 299
Query: 525 YKSGWAARITIFNWQDYTFKDWFAAVTMRDHYSGYENVYSFNGTKMG--APFNNSIFMQG 582
Y+ W ++TI NW + V ++ V+SFN + N++ M
Sbjct: 300 YRDYWRVKVTITNWNYRMNYSQWNLVVQHPNFENVSTVFSFNYKSLNPYGVINDTAMMW- 358
Query: 583 LPGLTYLEPITDGRTPEDPRVPGKQQSVISFSRKDAPNVNIAKGEGFPKRLYFDGEECAL 642
G+ Y + P+ G QS + F RKD KG FP+R+YF+GE C +
Sbjct: 359 --GVKYYNDLLMVAGPD-----GNVQSELLF-RKDRSTFTFDKGWAFPRRIYFNGESCVM 410
Query: 643 PD 644
P
Sbjct: 411 PS 412
>Os07g0604300 Similar to Phytochelatin synthetase (Fragment)
Length = 446
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 168/419 (40%), Gaps = 48/419 (11%)
Query: 228 ADLTIAYDVLQAFGNNYMVQVTIDNWSPIGRLDN--WNLTWEWKRGEFIYKMRGAYTLNK 285
++TI +DVLQ + Y+ V++ N+ + + W L W W + E I+ M G +
Sbjct: 36 GNITIKWDVLQWTPDGYVAVVSLYNYQQYRHIQSPGWKLGWVWAKKEIIWAMNGGQATEQ 95
Query: 286 EGPACVYSPAAGYYKDFDFTPAYSCEKRPIVVDLPPEREKDKDVGNIPFCCKNGTLLPPT 345
G F + C+K P +VDL P + + N CCK G L
Sbjct: 96 -----------GDCSKFKSNIPHCCKKDPEIVDLLPGTPYNMQIAN---CCKGGVLNSWA 141
Query: 346 MDESKSRAVFQMQVFKLPPDLNRTALYPPQNWKIIGKLNPQYACRQPVRVSPVVFPDQTG 405
D + + A FQ+ V + N+T + P+N+ + P Y C V P F Q G
Sbjct: 142 QDPANAIASFQVSVGQ-AGTTNKT-VRVPRNFTLKSP-GPGYTCGSAKVVRPTKFFSQDG 198
Query: 406 LMSSTPAVASWQVACNITR-PKRRAAKCCVSFSAYYDDSVVPXXXXXXXXXXXXXXXXXX 464
+T A +W V C ++ +R+ CCVS S++Y+D++V
Sbjct: 199 -RRTTQAHMTWNVTCTYSQIVAQRSPTCCVSLSSFYNDTIVNCPTCSCGCQNNKPGSCVE 257
Query: 465 XXXXXXXXXXPLPPEALLIPFDNRTAKGRAWAKIKHRRVPNPMPCGDNCGLSVNWHIMNN 524
P A ++ N K P C + V+WH+ N
Sbjct: 258 GNS---------PYLASVVNTHN-----------KDSLTPLVQCTSHMCPIRVHWHVKVN 297
Query: 525 YKSGWAARITIFNWQDYTFKDWFAAVTMRDHYSGYENVYSFNGTKMGAPFNNSIFMQGLP 584
YK W +IT+ N+ + VT + ++SFN + P+ L
Sbjct: 298 YKEYWRVKITVTNFNYRMNYSQWNLVTQHPSFDNLTTIFSFNYKSLN-PYGVINDTAMLW 356
Query: 585 GLTYLEPITDGRTPEDPRVPGKQQSVISFSRKDAPNVNIAKGEGFPKRLYFDGEECALP 643
G+ Y + P+ G QS + F +KD + KG FP+R+YF+G+ C +P
Sbjct: 357 GIKYYNDLLMTAGPD-----GNVQSELLF-KKDPKSFTFEKGWAFPRRVYFNGDNCVMP 409
>AK102170
Length = 457
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 102/221 (46%), Gaps = 21/221 (9%)
Query: 228 ADLTIAYDVLQAFGNNYMVQVTIDNWSPIGRLD--NWNLTWEWKRGEFIYKMRGAYTLNK 285
++TI +DV+Q + Y+ VT+ N+ + W L W W + E I+ M GA T +
Sbjct: 44 GNITIKWDVMQWTPDGYVAVVTMFNYQQFRHIQAPGWQLGWTWAKKEVIWSMVGAQTTEQ 103
Query: 286 EGPACVYSPAAGYYKDFDFTPAYSCEKRPIVVDLPPEREKDKDVGNIPFCCKNGTLLPPT 345
G F P + C+K P +VDL P + + N CCK G +
Sbjct: 104 -----------GDCSKFKGNPPHCCKKDPTIVDLLPGTPYNMQIAN---CCKAGVINTFN 149
Query: 346 MDESKSRAVFQMQVFKLPPDLNRTALYPPQNWKIIGKLNPQYACRQPVRVSPVVFPDQTG 405
D + + FQ+ V L N+T P+N+ + P Y C + + V P F G
Sbjct: 150 QDPLNAASSFQISV-GLAGTTNKTVKL-PKNFTLKAP-GPGYTCGRAMIVRPTKFFTNDG 206
Query: 406 LMSSTPAVASWQVACNITR-PKRRAAKCCVSFSAYYDDSVV 445
+T A+ +W V C ++ ++ CCVS S++Y+D++V
Sbjct: 207 -RRATQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIV 246
>Os10g0497700 Similar to Phytochelatin synthetase
Length = 425
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 105/221 (47%), Gaps = 19/221 (8%)
Query: 228 ADLTIAYDVLQAFGNNYMVQVTIDNWSPIGRLD--NWNLTWEWKRGEFIYKMRGAYTLNK 285
++TI +DV+Q + Y VT+ N+ + W L W W++ E I+ M GA +
Sbjct: 35 GNITIKWDVMQWTPDGYAAVVTLSNYQQFRHIQPPGWQLGWTWQQKEVIWSMYGAQAI-- 92
Query: 286 EGPACVYSPAAGYYKDFDFTPAYSCEKRPIVVDLPPEREKDKDVGNIPFCCKNGTLLPPT 345
E C S K+ P +SC+K P VVDL P D + N CCK G+L +
Sbjct: 93 EQGDCSMS------KEGSNVP-HSCKKHPTVVDLLPGAPIDLQIAN---CCKAGSLSAFS 142
Query: 346 MDESKSRAVFQMQVFKLPPDLNRTALYPPQNWKIIGKLNPQYACRQPVRVSPVVFPDQTG 405
D + S A FQ+ + + N T + P+N+ ++ P Y C + + V P F G
Sbjct: 143 QDPANSAASFQI-IVGHSGNSNET-VRVPKNFSLMAP-GPGYTCSRAMIVKPSRFLSPDG 199
Query: 406 LMSSTPAVASWQVACNITR-PKRRAAKCCVSFSAYYDDSVV 445
+T + +W V C ++ ++ CCVS S++ +D V
Sbjct: 200 -RRATQVLMTWNVICTYSQFLAQKVPSCCVSLSSFDNDKTV 239
>Os05g0386800 Similar to Phytochelatin synthetase-like protein 2
Length = 457
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 21/221 (9%)
Query: 228 ADLTIAYDVLQAFGNNYMVQVTIDNWSPIGRLD--NWNLTWEWKRGEFIYKMRGAYTLNK 285
++TI +DV+ + Y+ VT+ N+ + W L W W + E I+ M GA T +
Sbjct: 44 GNITIKWDVMSWTPDGYVAVVTMFNYQQFRHIQAPGWQLGWTWAKKEVIWSMVGAQTTEQ 103
Query: 286 EGPACVYSPAAGYYKDFDFTPAYSCEKRPIVVDLPPEREKDKDVGNIPFCCKNGTLLPPT 345
G F + C+K P VVDL P + + N CCK G +
Sbjct: 104 -----------GDCSKFKGGTPHCCKKDPTVVDLLPGTPYNMQIAN---CCKAGVINTFN 149
Query: 346 MDESKSRAVFQMQVFKLPPDLNRTALYPPQNWKIIGKLNPQYACRQPVRVSPVVFPDQTG 405
D S + + FQ+ V L N+T P+N+ + P Y C + + V P F G
Sbjct: 150 QDPSNAASSFQISV-GLAGTTNKTVKL-PKNFTLKAP-GPGYTCGRAMIVRPTKFFTGDG 206
Query: 406 LMSSTPAVASWQVACNITR-PKRRAAKCCVSFSAYYDDSVV 445
+T A+ +W V C ++ ++ CCVS S++Y+D++V
Sbjct: 207 -RRATQALMTWNVTCTYSQFLAQKTPSCCVSLSSFYNDTIV 246
>Os03g0416200 BRITTLE CULM1
Length = 468
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 25/225 (11%)
Query: 227 KADLTIAYDVLQAFGNNYMVQVTIDNWSPIGRL--DNWNLTWEWKRGEFIYKMRGAYTLN 284
K ++TI +DV+ + Y+ VT+ N+ ++ W + W W + E I+ + GA
Sbjct: 29 KGNITIKWDVISWTPDGYVAMVTMSNYQMYRQILAPGWTVGWSWAKKEVIWSIVGAQATE 88
Query: 285 KEGPACVYSPAAGYYKDFDFTPAYSCEKRPIVVDLPPEREKDKDVGNIPFCCKNGTLLPP 344
+ G F +SC++ P +VDL P ++ + N CCK G +
Sbjct: 89 Q-----------GDCSKFKGGIPHSCKRTPAIVDLLPGVPYNQQIAN---CCKAGVVSAY 134
Query: 345 TMDESKSRAVFQMQVFKLPPDLNRTALYPPQNWKIIGKLNPQYACRQPVRVSPVVF--PD 402
D + S + FQ+ V L N+T P N+ + G P Y C V V+ PD
Sbjct: 135 GQDPAGSVSAFQVSV-GLAGTTNKTVKLP-TNFTLAGP-GPGYTCGPATIVPSTVYLTPD 191
Query: 403 QTGLMSSTPAVASWQVACNITRP-KRRAAKCCVSFSAYYDDSVVP 446
+ T A+ +W V C ++ R CCVSFS++Y+ ++VP
Sbjct: 192 RR---RRTQALMTWTVTCTYSQQLASRYPTCCVSFSSFYNSTIVP 233
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,873,503
Number of extensions: 1023163
Number of successful extensions: 2071
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 2043
Number of HSP's successfully gapped: 13
Length of query: 683
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 575
Effective length of database: 11,396,689
Effective search space: 6553096175
Effective search space used: 6553096175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)