Os05g0386800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phytochelatin synthetase-like protein 2.
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Os05g0386800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phytochelatin synthetase-like protein 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 288.33 | 0.798 | 9.85 | -4.41 | 0.34 | 2.51 | 1.27 | -5.71 | -0.644 | 5.63 | 27.79 | 1246 | -- | -- |
| 299.85 | 0.806 | 9.74 | -3.3 | 0.551 | 2.01 | 0.844 | -- | -0.33 | 5.63 | 28.66 | 1246 | -- | -- |
| 290.9 | 0.794 | 9.84 | -4.13 | 0.41 | 2.41 | -- | -4.56 | -0.621 | 6.93 | 27.79 | 1231 | -- | -- |
| 294.44 | 0.799 | 9.7 | -3.17 | 0.376 | 1.95 | -- | -- | -0.446 | 7.47 | 27.89 | 1224 | -- | -- |
| 298.25 | 0.804 | 9.85 | -4.29 | -- | 2.48 | -- | -5.13 | -0.632 | -- | 27.74 | 1264 | -- | -- |
| 450.97 | 0.996 | 9.72 | -2.59 | 0.461 | -- | 1.82 | -- | -0.544 | 4.07 | -- | -- | -- | -- |
| 460.21 | 1 | 9.73 | -2.61 | 0.482 | -- | -- | -- | -0.554 | 4.57 | -- | -- | -- | -- |
| 301.66 | 0.809 | 9.7 | -3.16 | -- | 1.92 | -- | -- | -0.433 | -- | 27.9 | 1253 | -- | -- |
| 540.94 | 1.08 | 9.6 | -- | 0.303 | 1.46 | -- | -- | 0.0152 | 7.83 | 31.1 | 1153 | -- | -- |
| 472.59 | 1.02 | 9.73 | -2.59 | -- | -- | -- | -- | -0.542 | -- | -- | -- | -- | -- |
| 639.72 | 1.18 | 9.66 | -- | 0.434 | -- | -- | -- | -0.264 | 4.73 | -- | -- | -- | -- |
| 546.41 | 1.09 | 9.6 | -- | -- | 1.42 | -- | -- | 0.0499 | -- | 30.6 | 1182 | -- | -- |
| 649.7 | 1.19 | 9.66 | -- | -- | -- | -- | -- | -0.254 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 300.55 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 4 | 302.21 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 22 |
| 6 | 302.40 | temperature | 30 | 1440 | > th | dose dependent | sin | 16 | NA |
| 8 | 302.45 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 17 | 302.85 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 32 | 302.98 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 37 | 303.05 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 99 | 303.37 | temperature | 30 | 1440 | < th | dose independent | sin | 11 | NA |
| 101 | 303.38 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 208 | 303.42 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 213 | 303.53 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 216 | 303.54 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 217 | 303.57 | temperature | 30 | 1440 | > th | dose dependent | sin | 11 | NA |
| 224 | 303.69 | temperature | 30 | 1440 | > th | dose independent | sin | 12 | NA |
| 225 | 303.72 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 247 | 303.98 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 250 | 304.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 252 | 304.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 257 | 304.07 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 19 |
| 263 | 304.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 282 | 304.62 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 283 | 304.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 293 | 304.82 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 305 | 304.85 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 321 | 304.89 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 353 | 304.96 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 19 |
| 363 | 305.08 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 391 | 305.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 393 | 305.15 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 397 | 305.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 406 | 305.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 435 | 305.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 441 | 305.24 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 19 |
| 482 | 305.43 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 12 |
| 498 | 305.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 506 | 305.59 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 514 | 305.67 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 520 | 305.74 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 6 |
| 581 | 306.20 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 738 | 307.33 | radiation | 30 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 771 | 307.55 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 783 | 307.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 807 | 308.20 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 818 | 308.64 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 821 | 308.68 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 851 | 308.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 876 | 308.93 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 18 |
| 935 | 309.28 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 964 | 309.32 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 966 | 309.34 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 9 |
| 976 | 309.37 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 988 | 309.47 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 989 | 309.48 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 7 |