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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0685100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to COBRA-like protein 10 precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.31 (0.0468) R2 : 0.5
β1 : 1.22 (0.171) R2dD : 0.0591 R2D : 0.03
β2 : 1.02 (0.115) R2dC : 0.084 R2C : 0.0727
β3 : -3.02 (0.201) R2dE : 0.325 R2E : 0.0332
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -12.3 (0.885) R2dD*E : 0.303 R2D*E : 0.0318
γ1 : -0.235 (0.101) R2dN8 : 0.00949 R2N8 : 0.0187
σ : 0.865
deviance : 344.79
__
_____
C
peak time of C : 15.2
E
wheather : wind
threshold : 6.491
memory length : 4325
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19.7
open length of G : 3.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
345.28 0.873 4.31 1.16 0.963 -2.84 1.14 -12.1 -0.263 15 6.413 4322 19.2 3.14
462.76 1 4.31 1.05 1.02 -1.92 0.597 -- -0.242 14.9 8.099 4322 19.2 3.09
344.79 0.865 4.31 1.22 1.02 -3.02 -- -12.3 -0.235 15.2 6.491 4325 19.7 3.1
464.79 1 4.31 1 1 -1.89 -- -- -0.22 14.9 8.081 4322 19.2 3.09
402.78 0.935 4.31 1.22 -- -2.95 -- -12.3 -0.235 -- 6.491 4325 19.7 3.1
583.01 1.13 4.27 0.913 1 -- 1.09 -- -0.415 14.7 -- -- -- --
587.2 1.13 4.27 0.94 1 -- -- -- -0.408 14.7 -- -- -- --
489.31 1.03 4.29 1.97 -- -2.08 -- -- -0.0579 -- 5.7 10889 19.3 2.42
486.43 1.03 4.31 -- 0.984 -1.98 -- -- -0.22 15 8.092 4322 19.2 3.12
646.09 1.19 4.28 0.897 -- -- -- -- -0.434 -- -- -- -- --
610.5 1.16 4.29 -- 0.986 -- -- -- -0.513 14.6 -- -- -- --
522.59 1.06 4.28 -- -- -2.49 -- -- -0.0522 -- 5.6 10901 19.3 2.42
667.34 1.21 4.3 -- -- -- -- -- -0.533 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 348.45 wind 5 4320 > th dose dependent rect. 20 3
5 356.86 wind 7 4320 < th dose independent rect. 19 3
16 359.59 wind 7 4320 > th dose independent rect. 20 2
32 360.63 wind 9 4320 > th dose dependent rect. 19 7
119 368.13 atmosphere 995 14400 > th dose independent rect. 15 3
120 368.13 atmosphere 995 14400 > th dose independent rect. 10 10
122 368.16 atmosphere 995 14400 > th dose independent rect. 7 13
124 368.18 atmosphere 995 14400 > th dose independent rect. 15 5
141 368.50 atmosphere 995 14400 < th dose independent rect. 15 3
205 369.15 atmosphere 995 14400 < th dose dependent rect. 15 4
329 372.60 atmosphere 995 14400 < th dose independent rect. 18 1
332 372.60 atmosphere 995 14400 < th dose dependent rect. 18 1
442 381.35 atmosphere 995 14400 > th dose independent sin 22 NA
453 381.76 atmosphere 995 14400 < th dose independent sin 22 NA
481 383.83 atmosphere 995 14400 < th dose dependent sin 22 NA
485 384.05 atmosphere 995 14400 > th dose independent rect. 20 20
513 385.14 radiation 1 14400 < th dose dependent rect. 20 6
596 387.05 radiation 1 14400 < th dose dependent rect. 23 1
609 387.49 radiation 1 14400 < th dose dependent rect. 22 4
801 390.20 atmosphere 995 14400 > th dose independent rect. 14 23
802 390.21 atmosphere 995 14400 > th dose independent rect. 12 23
804 390.22 atmosphere 995 14400 > th dose independent no NA NA
805 390.23 atmosphere 995 14400 > th dose independent rect. 10 23
874 391.33 atmosphere 995 14400 > th dose independent rect. 14 21
920 391.96 atmosphere 995 14400 < th dose independent no NA NA