Os03g0301200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to COBRA-like protein 7 precursor.
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Os03g0301200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to COBRA-like protein 7 precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 155.63 | 0.586 | 7.98 | 0.28 | 0.658 | 1.21 | -0.498 | -0.596 | 0.2 | 9.79 | 20.3 | 195 | -- | -- |
| 157.03 | 0.584 | 7.97 | 0.371 | 0.661 | 1.27 | -0.58 | -- | 0.218 | 9.75 | 20.2 | 198 | -- | -- |
| 156.53 | 0.583 | 7.98 | 0.259 | 0.657 | 1.21 | -- | -0.631 | 0.202 | 9.9 | 20.3 | 193 | -- | -- |
| 158.16 | 0.586 | 7.97 | 0.323 | 0.673 | 1.31 | -- | -- | 0.224 | 9.89 | 20.08 | 203 | -- | -- |
| 179.97 | 0.628 | 8.01 | 0.256 | -- | 1.17 | -- | -0.865 | 0.189 | -- | 20.3 | 193 | -- | -- |
| 210.81 | 0.681 | 7.92 | 0.752 | 0.775 | -- | -0.564 | -- | 0.451 | 10.8 | -- | -- | -- | -- |
| 212.11 | 0.682 | 7.92 | 0.73 | 0.777 | -- | -- | -- | 0.45 | 11 | -- | -- | -- | -- |
| 182.14 | 0.629 | 7.99 | 0.361 | -- | 1.33 | -- | -- | 0.215 | -- | 20.11 | 128 | -- | -- |
| 160.71 | 0.59 | 7.98 | -- | 0.666 | 1.4 | -- | -- | 0.182 | 9.74 | 20.09 | 203 | -- | -- |
| 249.63 | 0.738 | 7.94 | 0.713 | -- | -- | -- | -- | 0.444 | -- | -- | -- | -- | -- |
| 226.17 | 0.703 | 7.94 | -- | 0.771 | -- | -- | -- | 0.369 | 10.9 | -- | -- | -- | -- |
| 185.22 | 0.634 | 8 | -- | -- | 1.42 | -- | -- | 0.169 | -- | 20.1 | 134 | -- | -- |
| 263.04 | 0.757 | 7.96 | -- | -- | -- | -- | -- | 0.365 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 151.67 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 22 |
| 7 | 153.76 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 17 |
| 13 | 154.48 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 18 |
| 25 | 155.29 | temperature | 20 | 270 | < th | dose independent | rect. | 8 | 21 |
| 26 | 155.41 | temperature | 20 | 270 | < th | dose independent | rect. | 6 | 22 |
| 37 | 155.81 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 44 | 156.00 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 23 |
| 57 | 156.43 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 22 |
| 104 | 157.77 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 18 |
| 112 | 157.87 | temperature | 25 | 720 | < th | dose dependent | sin | 20 | NA |
| 135 | 158.41 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 136 | 158.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 137 | 158.44 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 148 | 158.64 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 23 |
| 156 | 158.72 | temperature | 20 | 10 | > th | dose independent | no | NA | NA |
| 159 | 158.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 178 | 158.97 | temperature | 20 | 10 | < th | dose independent | rect. | 7 | 23 |
| 184 | 159.05 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 191 | 159.14 | temperature | 20 | 10 | > th | dose independent | rect. | 3 | 23 |
| 192 | 159.14 | temperature | 20 | 270 | < th | dose independent | rect. | 13 | 23 |
| 194 | 159.15 | temperature | 20 | 10 | < th | dose independent | rect. | 1 | 23 |
| 198 | 159.17 | temperature | 20 | 10 | < th | dose independent | rect. | 13 | 23 |
| 202 | 159.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 212 | 159.27 | temperature | 20 | 10 | < th | dose independent | rect. | 11 | 23 |
| 217 | 159.29 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 5 |
| 218 | 159.31 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 223 | 159.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 224 | 159.33 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 23 |
| 225 | 159.35 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 227 | 159.36 | temperature | 20 | 10 | < th | dose independent | rect. | 9 | 23 |
| 228 | 159.36 | temperature | 20 | 10 | < th | dose independent | rect. | 19 | 23 |
| 234 | 159.40 | temperature | 20 | 10 | < th | dose independent | rect. | 15 | 23 |
| 239 | 159.45 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 243 | 159.46 | temperature | 20 | 10 | < th | dose independent | rect. | 5 | 23 |
| 244 | 159.46 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 23 |
| 247 | 159.52 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 23 |
| 258 | 159.58 | temperature | 20 | 720 | < th | dose independent | rect. | 6 | 18 |
| 275 | 159.65 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 279 | 159.67 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 302 | 159.78 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 23 |
| 320 | 159.86 | temperature | 20 | 10 | < th | dose independent | rect. | 3 | 23 |
| 362 | 160.00 | temperature | 25 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 373 | 160.03 | temperature | 20 | 720 | > th | dose independent | sin | 21 | NA |
| 383 | 160.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 393 | 160.10 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 403 | 160.13 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 407 | 160.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 453 | 160.28 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 19 |
| 460 | 160.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 470 | 160.33 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 500 | 160.40 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 23 |
| 517 | 160.45 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 527 | 160.47 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 569 | 160.56 | temperature | 20 | 720 | < th | dose independent | sin | 21 | NA |
| 605 | 160.64 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 10 |
| 671 | 160.77 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 676 | 160.78 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 711 | 160.88 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 8 |
| 777 | 161.03 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 786 | 161.06 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 844 | 161.19 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 852 | 161.20 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 864 | 161.23 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 878 | 161.25 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 918 | 161.32 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 935 | 161.35 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 961 | 161.40 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 982 | 161.42 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |