Os07g0690900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phytochelatin synthetase-like conserved region family protein.
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Os07g0690900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phytochelatin synthetase-like conserved region family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 176.25 | 0.624 | 10.4 | 0.896 | 1.51 | 1.4 | -0.451 | -1.58 | 0.277 | 23.3 | 20.2 | 1060 | -- | -- |
| 172.82 | 0.612 | 10.4 | 0.791 | 1.55 | 1.93 | -0.873 | -- | 0.266 | 23.3 | 19.6 | 2533 | -- | -- |
| 177.06 | 0.62 | 10.4 | 0.882 | 1.5 | 1.39 | -- | -1.74 | 0.27 | 23.3 | 20.22 | 1060 | -- | -- |
| 173.75 | 0.614 | 10.4 | 0.811 | 1.56 | 2.08 | -- | -- | 0.249 | 23.3 | 19.14 | 2515 | -- | -- |
| 307.01 | 0.816 | 10.4 | 0.811 | -- | 1.76 | -- | -1.57 | 0.178 | -- | 20.71 | 855 | -- | -- |
| 244.43 | 0.733 | 10.3 | 1.79 | 1.67 | -- | -0.909 | -- | 0.676 | 23.5 | -- | -- | -- | -- |
| 247.97 | 0.737 | 10.3 | 1.82 | 1.68 | -- | -- | -- | 0.681 | 23.4 | -- | -- | -- | -- |
| 314.86 | 0.826 | 10.3 | 1.1 | -- | 1.91 | -- | -- | 0.243 | -- | 20.8 | 889 | -- | -- |
| 186.43 | 0.636 | 10.4 | -- | 1.56 | 2.53 | -- | -- | 0.0906 | 23.2 | 19.17 | 2549 | -- | -- |
| 424.31 | 0.963 | 10.2 | 1.87 | -- | -- | -- | -- | 0.698 | -- | -- | -- | -- | -- |
| 335.73 | 0.857 | 10.3 | -- | 1.7 | -- | -- | -- | 0.477 | 23.5 | -- | -- | -- | -- |
| 331.06 | 0.847 | 10.4 | -- | -- | 2.87 | -- | -- | 0.0598 | -- | 18.9 | 2400 | -- | -- |
| 516.44 | 1.06 | 10.3 | -- | -- | -- | -- | -- | 0.491 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 170.82 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 18 |
| 4 | 171.17 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 16 | 172.77 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 16 |
| 25 | 173.09 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 77 | 175.15 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 85 | 175.28 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 91 | 175.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 92 | 175.46 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 120 | 176.10 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 126 | 176.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 157 | 176.58 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 12 |
| 177 | 176.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 180 | 176.77 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 193 | 176.91 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 232 | 177.19 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 10 |
| 235 | 177.22 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 262 | 177.34 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 291 | 177.50 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 9 |
| 293 | 177.51 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 9 |
| 312 | 177.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 328 | 177.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 5 |
| 419 | 178.24 | temperature | 25 | 720 | < th | dose dependent | sin | 6 | NA |
| 462 | 178.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 489 | 178.71 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 15 |
| 513 | 178.84 | temperature | 20 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 546 | 179.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 547 | 179.03 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 565 | 179.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 628 | 179.63 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 8 |
| 633 | 179.67 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 652 | 179.80 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 689 | 180.01 | temperature | 20 | 720 | > th | dose independent | rect. | 9 | 23 |
| 692 | 180.08 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 720 | 180.26 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 744 | 180.37 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 3 |
| 766 | 180.50 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 787 | 180.65 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 789 | 180.67 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 23 |
| 810 | 180.79 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 816 | 180.85 | wind | 9 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 918 | 181.30 | wind | 1 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 948 | 181.41 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 981 | 181.57 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |