FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0416200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : BRITTLE CULM1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.83 (0.0689) R2 : 0.612
β1 : -6.41 (0.272) R2dD : 0.582 R2D : 0.406
β2 : 1.75 (0.188) R2dC : 0.0869 R2C : -0.0151
β3 : -3.55 (0.361) R2dE : 0.109 R2E : -0.0258
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.07 (1.23) R2dD*E : 0.0262 R2D*E : -0.111
γ1 : -1.68 (0.155) R2dN8 : 0.152 R2N8 : -0.0531
σ : 1.28
deviance : 752.36
__
_____
C
peak time of C : 7.84
E
wheather : radiation
threshold : 9.927
memory length : 1332
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 13.2
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
751.71 1.29 5.83 -6.43 1.74 -3.54 0.519 5.91 -1.69 7.84 10 1337 13.2 --
786.15 1.31 5.79 -6.05 1.91 -3.31 1.37 -- -1.55 7.76 12.29 1276 13 --
752.36 1.28 5.83 -6.41 1.75 -3.55 -- 6.07 -1.68 7.84 9.927 1332 13.2 --
792.75 1.31 5.79 -5.91 2.08 -3.51 -- -- -1.5 7.65 9.592 1264 13.1 --
801.23 1.32 5.85 -6.26 -- -3.33 -- 4.98 -1.62 -- 10.7 1585 13.6 --
923.87 1.42 5.74 -5.99 1.08 -- 1.26 -- -1.14 7.95 -- -- -- --
928.07 1.43 5.74 -5.95 1.08 -- -- -- -1.14 8.28 -- -- -- --
816.69 1.33 5.89 -5.98 -- -3.34 -- -- -1.63 -- 12.69 1564 11.7 --
1633.02 1.88 5.81 -- 2.06 -3.84 -- -- -1.15 7.54 10 2671 13.2 --
992.16 1.47 5.77 -5.94 -- -- -- -- -1.13 -- -- -- -- --
1861.28 2.02 5.59 -- 1.05 -- -- -- -0.475 8.69 -- -- -- --
1632.23 1.88 5.77 -- -- -3.52 -- -- -1.08 -- 10 2981 11.9 --
1923.86 2.05 5.62 -- -- -- -- -- -0.466 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 761.95 radiation 10 1440 < th dose dependent rect. 11 7
2 762.19 radiation 10 1440 < th dose dependent rect. 11 19
3 762.57 radiation 10 1440 < th dose dependent sin 19 NA
4 762.82 radiation 10 1440 < th dose dependent rect. 11 17
6 763.00 radiation 10 1440 < th dose dependent rect. 11 14
11 763.36 radiation 10 1440 < th dose dependent rect. 11 11
17 763.77 radiation 10 1440 < th dose independent rect. 15 2
51 766.60 radiation 10 1440 > th dose independent rect. 11 22
60 767.63 radiation 10 1440 > th dose independent rect. 15 22
63 768.55 radiation 10 1440 > th dose independent rect. 11 20
68 769.41 humidity 80 1440 < th dose dependent rect. 15 6
72 769.96 humidity 70 1440 < th dose independent rect. 16 16
79 770.35 radiation 10 1440 > th dose independent sin 14 NA
99 771.39 humidity 70 1440 < th dose independent sin 12 NA
108 772.26 humidity 70 1440 > th dose independent rect. 16 16
109 772.29 humidity 70 1440 > th dose independent sin 12 NA
111 772.50 humidity 70 1440 < th dose independent rect. 16 4
132 773.63 radiation 10 1440 > th dose independent rect. 8 23
153 774.31 radiation 10 1440 > th dose independent rect. 15 15
156 774.41 radiation 10 1440 > th dose independent rect. 11 7
168 774.46 radiation 10 1440 > th dose independent rect. 15 3
184 774.63 humidity 80 1440 < th dose dependent rect. 15 18
200 775.07 humidity 70 1440 > th dose independent rect. 16 13
205 775.19 humidity 70 1440 > th dose independent rect. 16 9
207 775.26 humidity 70 1440 > th dose independent rect. 16 4
212 775.35 humidity 80 1440 < th dose dependent sin 16 NA
233 776.35 radiation 10 1440 > th dose independent rect. 8 10
269 777.09 radiation 10 1440 > th dose independent no NA NA
270 777.09 radiation 10 1440 > th dose independent rect. 5 13
351 777.14 humidity 80 1440 < th dose dependent rect. 11 10
440 778.65 humidity 80 1440 < th dose dependent rect. 11 22
443 778.84 humidity 80 1440 < th dose dependent rect. 16 1
504 780.18 radiation 10 1440 < th dose independent rect. 15 13
514 780.39 radiation 10 1440 < th dose independent rect. 15 10
558 781.62 radiation 1 1440 > th dose dependent rect. 15 3
631 782.60 humidity 80 1440 < th dose dependent rect. 7 14
732 783.65 radiation 1 1440 > th dose dependent rect. 16 1
745 783.86 humidity 80 1440 < th dose dependent rect. 15 23
859 785.35 humidity 80 1440 < th dose dependent no NA NA
969 787.32 humidity 70 1440 > th dose independent rect. 15 21
999 787.61 atmosphere 995 43200 < th dose dependent rect. 14 13