Os03g0416300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phytochelatin synthetase (Fragment).
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Os03g0416300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phytochelatin synthetase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 158.28 | 0.591 | 3.08 | 0.422 | 0.189 | 1.17 | 0.21 | 2.02 | -0.0312 | 4.86 | 1015 | 7554 | -- | -- |
| 161.92 | 0.593 | 3.01 | 0.541 | 0.183 | 0.508 | 0.422 | -- | 0.00527 | 4 | 1014 | 7174 | -- | -- |
| 157.94 | 0.585 | 3.12 | 0.473 | 0.174 | 1.92 | -- | 3.62 | -0.0525 | 5.88 | 1016 | 8719 | -- | -- |
| 161.76 | 0.592 | 3.01 | 0.503 | 0.198 | 0.521 | -- | -- | 0.00584 | 5.3 | 1014 | 6740 | -- | -- |
| 159.59 | 0.588 | 3.15 | 0.569 | -- | 2.35 | -- | 4.52 | -0.0399 | -- | 1016 | 8670 | -- | -- |
| 169.86 | 0.611 | 3.04 | 0.279 | 0.186 | -- | 0.201 | -- | -0.104 | 4.81 | -- | -- | -- | -- |
| 169.94 | 0.61 | 3.04 | 0.278 | 0.189 | -- | -- | -- | -0.105 | 5.22 | -- | -- | -- | -- |
| 163.76 | 0.596 | 3.02 | 0.513 | -- | 0.515 | -- | -- | 0.00974 | -- | 1014 | 6864 | -- | -- |
| 165.91 | 0.6 | 3.03 | -- | 0.213 | 0.547 | -- | -- | -0.0766 | 4.97 | 1013 | 4338 | -- | -- |
| 171.82 | 0.612 | 3.04 | 0.285 | -- | -- | -- | -- | -0.1 | -- | -- | -- | -- | -- |
| 171.98 | 0.613 | 3.05 | -- | 0.194 | -- | -- | -- | -0.136 | 5.16 | -- | -- | -- | -- |
| 168.33 | 0.604 | 3.03 | -- | -- | 0.524 | -- | -- | -0.0728 | -- | 1013 | 4360 | -- | -- |
| 173.96 | 0.616 | 3.05 | -- | -- | -- | -- | -- | -0.132 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 150.70 | wind | 1.0 | 270 | < th | dose independent | rect. | 18 | 1 |
| 2 | 150.70 | wind | 1.0 | 270 | < th | dose dependent | rect. | 18 | 1 |
| 5 | 153.53 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 12 | 11 |
| 10 | 154.70 | wind | 7.0 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 14 | 154.96 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 21 |
| 23 | 155.50 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 24 | 2 |
| 25 | 155.56 | wind | 7.0 | 4320 | > th | dose independent | rect. | 23 | 3 |
| 31 | 155.75 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 51 | 156.27 | radiation | 10.0 | 10 | < th | dose independent | rect. | 10 | 3 |
| 57 | 156.39 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 10 | 3 |
| 80 | 156.79 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 82 | 156.83 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 86 | 156.85 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 111 | 157.04 | wind | 3.0 | 270 | < th | dose independent | rect. | 16 | 4 |
| 141 | 157.25 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 152 | 157.33 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 168 | 157.48 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 9 | 11 |
| 171 | 157.52 | wind | 1.0 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 175 | 157.56 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 2 | 21 |
| 178 | 157.58 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 182 | 157.60 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 230 | 157.80 | temperature | 25.0 | 30 | < th | dose independent | rect. | 3 | 20 |
| 296 | 158.07 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 14 | 2 |
| 301 | 158.09 | wind | 7.0 | 1440 | < th | dose independent | rect. | 24 | 9 |
| 373 | 158.38 | radiation | 10.0 | 90 | < th | dose independent | rect. | 2 | 21 |
| 393 | 158.48 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 396 | 158.48 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 21 | NA |
| 454 | 158.63 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 456 | 158.64 | wind | 7.0 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 457 | 158.64 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 469 | 158.69 | wind | 3.0 | 270 | < th | dose dependent | rect. | 16 | 4 |
| 470 | 158.70 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 505 | 158.79 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 513 | 158.79 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 568 | 158.88 | wind | 7.0 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 569 | 158.89 | wind | 3.0 | 10 | < th | dose dependent | rect. | 19 | 3 |
| 586 | 158.93 | atmosphere | 1015.0 | 4320 | < th | dose independent | sin | 22 | NA |
| 614 | 158.95 | atmosphere | 1015.0 | 4320 | > th | dose independent | sin | 22 | NA |
| 622 | 158.97 | humidity | 50.0 | 4320 | < th | dose dependent | sin | 12 | NA |
| 635 | 159.01 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 700 | 159.13 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 5 |
| 714 | 159.16 | radiation | 10.0 | 90 | < th | dose independent | rect. | 2 | 11 |
| 719 | 159.17 | wind | 7.0 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 731 | 159.20 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 12 | 11 |
| 742 | 159.22 | wind | 1.0 | 270 | < th | dose dependent | rect. | 21 | 8 |
| 804 | 159.35 | radiation | 10.0 | 30 | < th | dose independent | rect. | 11 | 12 |
| 821 | 159.38 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 824 | 159.39 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 7 |
| 833 | 159.40 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 15 |
| 840 | 159.41 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 13 |
| 842 | 159.41 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 19 |
| 853 | 159.42 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 21 |
| 861 | 159.43 | wind | 1.0 | 270 | < th | dose dependent | rect. | 14 | 15 |
| 871 | 159.45 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 873 | 159.46 | wind | 1.0 | 270 | < th | dose dependent | rect. | 24 | 3 |
| 889 | 159.49 | wind | 1.0 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 890 | 159.50 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 913 | 159.53 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 2 | 20 |
| 945 | 159.59 | radiation | 10.0 | 30 | < th | dose independent | rect. | 2 | 14 |
| 952 | 159.60 | radiation | 10.0 | 90 | < th | dose independent | rect. | 19 | 17 |
| 970 | 159.63 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 975 | 159.63 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |