BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0560400 Os06g0560400|AK108074
(216 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0560400 Protein of unknown function DUF862, eukaryotic... 405 e-113
Os04g0548000 Protein of unknown function DUF862, eukaryotic... 224 4e-59
Os03g0100900 Protein of unknown function DUF862, eukaryotic... 218 3e-57
Os02g0655500 Protein of unknown function DUF862, eukaryotic... 213 6e-56
Os03g0198500 Protein of unknown function DUF862, eukaryotic... 207 3e-54
Os06g0182100 Protein of unknown function DUF862, eukaryotic... 138 4e-33
Os10g0533900 Protein of unknown function DUF862, eukaryotic... 82 3e-16
Os02g0814000 Protein of unknown function DUF862, eukaryotic... 68 5e-12
>Os06g0560400 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 216
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 192/192 (100%), Positives = 192/192 (100%)
Query: 25 YTVVLNVYDLTPLNNYLHWCGLGIFHSAVEVHGSEYSFGAHDHPTSGVFEVEPKCCPGFM 84
YTVVLNVYDLTPLNNYLHWCGLGIFHSAVEVHGSEYSFGAHDHPTSGVFEVEPKCCPGFM
Sbjct: 25 YTVVLNVYDLTPLNNYLHWCGLGIFHSAVEVHGSEYSFGAHDHPTSGVFEVEPKCCPGFM 84
Query: 85 YRCSIFIGRTSLNPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTGKPIPGWV 144
YRCSIFIGRTSLNPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTGKPIPGWV
Sbjct: 85 YRCSIFIGRTSLNPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTGKPIPGWV 144
Query: 145 NRPAKLGAFCNCLLPESMRLESTGTKHLADCHFSDDSRTSSNEHFEDEDLEDKHLLSQSS 204
NRPAKLGAFCNCLLPESMRLESTGTKHLADCHFSDDSRTSSNEHFEDEDLEDKHLLSQSS
Sbjct: 145 NRPAKLGAFCNCLLPESMRLESTGTKHLADCHFSDDSRTSSNEHFEDEDLEDKHLLSQSS 204
Query: 205 VSEDAIVKEVHR 216
VSEDAIVKEVHR
Sbjct: 205 VSEDAIVKEVHR 216
>Os04g0548000 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 207
Score = 224 bits (571), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/188 (57%), Positives = 143/188 (76%), Gaps = 6/188 (3%)
Query: 27 VVLNVYDLTPLNNYLHWCGLGIFHSAVEVHGSEYSFGAHDHPTSGVFEVEPKCCPGFMYR 86
VV+NVYDLTP+NNYL+W GLGIFHS +EVHG EY FGAH+ PTSGVFEVEPK CPGF+YR
Sbjct: 18 VVVNVYDLTPMNNYLYWFGLGIFHSGIEVHGVEYGFGAHEFPTSGVFEVEPKNCPGFVYR 77
Query: 87 CSIFIGRTSLNPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTGKPIPGWVNR 146
S+ +G T ++ EFR FI+++ +Y+G++YHLISKNCNHFTDD+S LTGKPIPGWVNR
Sbjct: 78 RSVRMGTTGMSRAEFRSFIEKLTGKYNGNSYHLISKNCNHFTDDVSKNLTGKPIPGWVNR 137
Query: 147 PAKLGAFCNCLLPESMRLESTGTKHLAD-CHFSD---DSRTSSNEHFEDEDLEDKHLLSQ 202
A++G+F N LLP+S+++ + +H+ FSD DSR+ S D D D+HLLS
Sbjct: 138 LARVGSFFNYLLPKSIQV--SAVRHVPTHPAFSDDDMDSRSCSISGDSDVDELDQHLLSA 195
Query: 203 SSVSEDAI 210
+++ +I
Sbjct: 196 TTIELHSI 203
>Os03g0100900 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 245
Score = 218 bits (555), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 102/178 (57%), Positives = 134/178 (75%), Gaps = 4/178 (2%)
Query: 29 LNVYDLTPLNNYLHWCGLGIFHSAVEVHGSEYSFGAHDHPTSGVFEVEPKCCPGFMYRCS 88
LN+YD++P+N+YL+W GLGIFHS +EVHG EY FGAH++PTSGVF+VEPK CPGF++R S
Sbjct: 52 LNIYDISPINHYLYWFGLGIFHSGIEVHGMEYGFGAHEYPTSGVFQVEPKSCPGFIFRRS 111
Query: 89 IFIGRTSLNPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTGKPIPGWVNRPA 148
+ +G T ++ E R FI+ +A +YHGDTYHLI+KNCNHFT D+ RLTGKPIPGWVNR A
Sbjct: 112 VCVGSTDMSRSEVRSFIEDLAEDYHGDTYHLIAKNCNHFTADICKRLTGKPIPGWVNRLA 171
Query: 149 KLGAFCNCLLPESMRLESTGTKHLAD-CHFSDDSRTSSNEHFEDEDLED-KHLLSQSS 204
+LG+FCNC+LPES+++ + K + D F DD S+ + D +D HLL S
Sbjct: 172 RLGSFCNCVLPESIKV--SAVKDVTDPPEFPDDDMESNASIVDGSDADDLDHLLITPS 227
>Os02g0655500 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 204
Score = 213 bits (543), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 99/178 (55%), Positives = 130/178 (73%), Gaps = 2/178 (1%)
Query: 27 VVLNVYDLTPLNNYLHWCGLGIFHSAVEVHGSEYSFGAHDHPTSGVFEVEPKCCPGFMYR 86
V+LNVYDLTP N+YL+W G G+FHS +EVHG EY FGAHD P+SGVFEVE K CPGF+YR
Sbjct: 12 VLLNVYDLTPANDYLYWLGFGVFHSGIEVHGMEYGFGAHDFPSSGVFEVESKSCPGFIYR 71
Query: 87 CSIFIGRTSLNPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTGKPIPGWVNR 146
++++G T ++ E+R FI+++A +YHG++YHL+SKNCNHFTDD+ LTGKPIP WVNR
Sbjct: 72 KTVWLGTTDMSHGEYRSFIEKLAGKYHGNSYHLVSKNCNHFTDDVCKNLTGKPIPSWVNR 131
Query: 147 PAKLGAFCNCLLPESMRLESTGTKHLADCHFSDDSRTSSNEHFEDEDLEDKHLLSQSS 204
A++G+F +CLLPES+++ G DD + S D + EDKHLL S
Sbjct: 132 LARVGSFFDCLLPESVQVSPVGRVPTLRPVADDDLDSIST--VSDNNEEDKHLLPAPS 187
>Os03g0198500 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 247
Score = 207 bits (528), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 89/142 (62%), Positives = 114/142 (80%)
Query: 27 VVLNVYDLTPLNNYLHWCGLGIFHSAVEVHGSEYSFGAHDHPTSGVFEVEPKCCPGFMYR 86
V LNVYDLTP+N Y++W GLGIFHS +EVHG EY+FGAHD+P+SGVFEVEP+ CPGF +R
Sbjct: 44 VYLNVYDLTPMNGYVYWAGLGIFHSGIEVHGVEYAFGAHDYPSSGVFEVEPRQCPGFRFR 103
Query: 87 CSIFIGRTSLNPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTGKPIPGWVNR 146
SIF+G T L+P++ R F++ + Y+GDTYHLI+KNCNHF D+ +LTG IP WVNR
Sbjct: 104 KSIFLGTTCLDPIQVRQFMELQSVNYNGDTYHLITKNCNHFCKDMCYKLTGNKIPKWVNR 163
Query: 147 PAKLGAFCNCLLPESMRLESTG 168
A++GA CNCLLPES+++ G
Sbjct: 164 LARIGAICNCLLPESLKISPVG 185
>Os06g0182100 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 271
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 87/140 (62%), Gaps = 7/140 (5%)
Query: 27 VVLNVYDLTPLNNYLHWCGLGIFHSAVEVHGSE-------YSFGAHDHPTSGVFEVEPKC 79
V LNVYD+TP N Y W GLG++HS V+ + Y++GAHD SG+FEV P+
Sbjct: 46 VYLNVYDVTPANGYARWLGLGVYHSGVQGMYALLSSPSILYAYGAHDGAGSGIFEVAPRR 105
Query: 80 CPGFMYRCSIFIGRTSLNPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTGKP 139
CPG+ +R +I +G T L E R + +A+++ GD Y+L+S+NCNHF D RL
Sbjct: 106 CPGYAFREAILVGTTELTRAEVRAVMADLAADFPGDAYNLVSRNCNHFCDAACRRLVRAR 165
Query: 140 IPGWVNRPAKLGAFCNCLLP 159
IP WVNR AK+G C++P
Sbjct: 166 IPRWVNRLAKIGVVFTCVIP 185
>Os10g0533900 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 246
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 76/140 (54%), Gaps = 16/140 (11%)
Query: 27 VVLNVYDLT-----PLNN--------YLHWCGLG-IFHSAVEVHGSE-YSFGAHDHPTSG 71
VVL+VYD+T NN + GLG IFHSAV+V+G E +SFG ++ SG
Sbjct: 4 VVLHVYDVTNSDSEKTNNTILQINRIFKDRIGLGGIFHSAVQVYGEEEWSFGFCEN-GSG 62
Query: 72 VFEVEPKCCPGFMYRCSIFIGRTSLNPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDL 131
VF P + YR I +G T + ++ ++ E+ G +Y L+S+NCNHF D L
Sbjct: 63 VFSCPIGKNPMYTYRECIVLGETECSIATVNRILRELSREWPGHSYDLLSRNCNHFCDVL 122
Query: 132 STRLTGKPIPGWVNRPAKLG 151
RL +PGWVNR A G
Sbjct: 123 CERLAVPKLPGWVNRFANAG 142
>Os02g0814000 Protein of unknown function DUF862, eukaryotic domain containing
protein
Length = 252
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 17/153 (11%)
Query: 25 YTVVLNVYDLT-PLNNYLHWCGLG-----IFHSAVEVHGSEYSFGAHDHPTSGVFEVEPK 78
Y VVLNVYDL+ L L LG I+H+ V V+G+EY FG G+ +
Sbjct: 6 YKVVLNVYDLSNGLARQLSTSFLGKPIEAIWHTGVVVYGNEYFFGG------GIQSLAAG 59
Query: 79 CCP-GFMYRCSIFIGRTSLNPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTG 137
P G R + +G T + F D+++ ++ Y +TY L+S NCN+F+++++ L G
Sbjct: 60 RTPYGRPVRV-VEMGETHIPREVFEDYLRDISPRYTAETYRLLSHNCNNFSNEVAQFLVG 118
Query: 138 KPIPGWV-NRPAKL--GAFCNCLLPESMRLEST 167
IP ++ N PA++ ++P LEST
Sbjct: 119 AGIPDYILNLPAEVMSSPMGPLIMPMIQNLEST 151
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,017,483
Number of extensions: 292743
Number of successful extensions: 641
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 637
Number of HSP's successfully gapped: 8
Length of query: 216
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 119
Effective length of database: 11,971,043
Effective search space: 1424554117
Effective search space used: 1424554117
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)