BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0527300 Os06g0527300|AK119931
(242 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0527300 Similar to Cyclic nucleotide-gated channel C (... 456 e-129
Os06g0527100 Similar to Cyclic nucleotide-gated channel A (... 404 e-113
Os03g0646300 Similar to Cyclic nucleotide-gated channel A (... 139 2e-33
Os02g0627700 Similar to Cyclic nucleotide-gated channel A (... 139 2e-33
Os02g0789100 Cyclic nucleotide-binding domain containing pr... 137 1e-32
Os09g0558300 Similar to Cyclic nucleotide-gated channel A (... 129 2e-30
Os02g0773400 Ion transport domain containing protein 121 4e-28
Os12g0163000 Similar to Cyclic nucleotide-gated channel A (... 107 1e-23
>Os06g0527300 Similar to Cyclic nucleotide-gated channel C (Fragment)
Length = 242
Score = 456 bits (1173), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/242 (93%), Positives = 226/242 (93%)
Query: 1 MSLRRHNALSSLKERTAGIFAFLGNLVHSETLERSVLHEMKLTTGTLHPQGPFLQSWNKI 60
MSLRRHNALSSLKERTAGIFAFLGNLVHSETLERSVLHEMKLTTGTLHPQGPFLQSWNKI
Sbjct: 1 MSLRRHNALSSLKERTAGIFAFLGNLVHSETLERSVLHEMKLTTGTLHPQGPFLQSWNKI 60
Query: 61 FVLSCIFAVSVDPLFFYIPVINENNTCWYLDKKLEITASVLRFFTDIFYILHIIFQFRTG 120
FVLSCIFAVSVDPLFFYIPVINENNTCWYLDKKLEITASVLRFFTDIFYILHIIFQFRTG
Sbjct: 61 FVLSCIFAVSVDPLFFYIPVINENNTCWYLDKKLEITASVLRFFTDIFYILHIIFQFRTG 120
Query: 121 YIASSPTTFDRGVLVEDRYAIAKRYLSTYFLIDVFAXXXXXXXXXXXXXXXXRSSEVAKA 180
YIASSPTTFDRGVLVEDRYAIAKRYLSTYFLIDVFA RSSEVAKA
Sbjct: 121 YIASSPTTFDRGVLVEDRYAIAKRYLSTYFLIDVFAVLPLPQVVILVVLPNLRSSEVAKA 180
Query: 181 KNILMFIVLCQYVPRLIRIRPLYLQITRSAGVITETPWPGAVLILLIYLLASHVSILFNN 240
KNILMFIVLCQYVPRLIRIRPLYLQITRSAGVITETPWPGAVLILLIYLLASHVSILFNN
Sbjct: 181 KNILMFIVLCQYVPRLIRIRPLYLQITRSAGVITETPWPGAVLILLIYLLASHVSILFNN 240
Query: 241 SG 242
SG
Sbjct: 241 SG 242
>Os06g0527100 Similar to Cyclic nucleotide-gated channel A (Fragment)
Length = 694
Score = 404 bits (1039), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/234 (86%), Positives = 207/234 (88%)
Query: 1 MSLRRHNALSSLKERTAGIFAFLGNLVHSETLERSVLHEMKLTTGTLHPQGPFLQSWNKI 60
MS RRHNALSSLKERTAG+FAFLGNLVHSETL+R VLHE KLTT TLHPQGPFLQSWNKI
Sbjct: 22 MSPRRHNALSSLKERTAGVFAFLGNLVHSETLKRLVLHERKLTTRTLHPQGPFLQSWNKI 81
Query: 61 FVLSCIFAVSVDPLFFYIPVINENNTCWYLDKKLEITASVLRFFTDIFYILHIIFQFRTG 120
FVLSCIFAVSVDPLFFYIPVIN+NNTCWYLDKKLEITASVLRFFTDIFYILHIIFQFRTG
Sbjct: 82 FVLSCIFAVSVDPLFFYIPVINDNNTCWYLDKKLEITASVLRFFTDIFYILHIIFQFRTG 141
Query: 121 YIASSPTTFDRGVLVEDRYAIAKRYLSTYFLIDVFAXXXXXXXXXXXXXXXXRSSEVAKA 180
YIASS TTF RGVLVEDRYAIAKRYLSTYFLIDVFA SEV KA
Sbjct: 142 YIASSLTTFGRGVLVEDRYAIAKRYLSTYFLIDVFAVLPLPQVVILVVLPNLGGSEVTKA 201
Query: 181 KNILMFIVLCQYVPRLIRIRPLYLQITRSAGVITETPWPGAVLILLIYLLASHV 234
KNILMFIV+CQYVPRLIRIRPLYLQITRSAGVITETPW GAVL LLIYLLASHV
Sbjct: 202 KNILMFIVICQYVPRLIRIRPLYLQITRSAGVITETPWAGAVLNLLIYLLASHV 255
>Os03g0646300 Similar to Cyclic nucleotide-gated channel A (Fragment)
Length = 696
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 105/188 (55%), Gaps = 2/188 (1%)
Query: 49 PQGPFLQSWNKIFVLSCIFAVSVDPLFFYIPVINEN--NTCWYLDKKLEITASVLRFFTD 106
PQ L N+ FV+SCI +++VDP+FFY P + N N C + + L I+ASV+R D
Sbjct: 82 PQDRLLVRLNRSFVVSCIVSIAVDPVFFYAPQVTANGGNLCVGISRDLAISASVVRTVVD 141
Query: 107 IFYILHIIFQFRTGYIASSPTTFDRGVLVEDRYAIAKRYLSTYFLIDVFAXXXXXXXXXX 166
+F+ I+ QFRT YIA S F RG LV D IA RY +F D+ +
Sbjct: 142 LFFAARIVLQFRTAYIAPSSRVFGRGELVIDTAQIAARYFRRFFAADLLSVLPLPQIVIW 201
Query: 167 XXXXXXRSSEVAKAKNILMFIVLCQYVPRLIRIRPLYLQITRSAGVITETPWPGAVLILL 226
+ + V K+ L+ IV QY+PR++RI PL ++ R++G E+ + GA LL
Sbjct: 202 KFLHRSKGAAVLSTKDALLIIVFLQYIPRVVRIYPLSSELKRTSGAFAESAYAGAAYYLL 261
Query: 227 IYLLASHV 234
Y+LASH+
Sbjct: 262 WYMLASHI 269
>Os02g0627700 Similar to Cyclic nucleotide-gated channel A (Fragment)
Length = 686
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 116/214 (54%), Gaps = 7/214 (3%)
Query: 27 VHSETLERSVLHEMK--LTTGTLH----PQGPFLQSWNKIFVLSCIFAVSVDPLFFYIPV 80
+ L R+ E++ +++G H P+G + W+KIF+ +C+ ++ VDPLF Y+
Sbjct: 63 LKDRVLSRAFSEELESLMSSGANHLFFDPRGQLIHLWSKIFLAACLASLFVDPLFLYLTG 122
Query: 81 INENNTCWYLDKKLEITASVLRFFTDIFYILHIIFQFRTGYIASSPTTFDRGVLVEDRYA 140
+N C L L T S++R D+FY HI F+FRT +IA S F RG LV
Sbjct: 123 TRQN-MCIELKYSLAFTLSMIRSLLDLFYAAHIFFRFRTAFIAPSSRVFGRGELVIQPCK 181
Query: 141 IAKRYLSTYFLIDVFAXXXXXXXXXXXXXXXXRSSEVAKAKNILMFIVLCQYVPRLIRIR 200
IA+RYL+ F D+ + S A KNIL F ++ QY+PRL +I
Sbjct: 182 IARRYLAGTFWFDLVTALPLPQFVIWIVIPKLKESATANRKNILRFSIIFQYLPRLFQIF 241
Query: 201 PLYLQITRSAGVITETPWPGAVLILLIYLLASHV 234
PL QI + GV+TET W GA L++Y+LASHV
Sbjct: 242 PLSRQIVMATGVMTETAWAGAAYNLILYMLASHV 275
>Os02g0789100 Cyclic nucleotide-binding domain containing protein
Length = 480
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 106/192 (55%), Gaps = 4/192 (2%)
Query: 47 LHPQGPFLQSWNKIFVLSCIFAVSVDPLFFYIPVINEN--NTCWYLDKKLEITASVLRFF 104
L P F+ +WN IF+ SC A+ +DPL+FY+P I+ N+C D+ L IT + R
Sbjct: 67 LDPSSDFILTWNHIFLFSCFVALFIDPLYFYVPKISYGTPNSCIGTDRHLAITVTFFRSI 126
Query: 105 TDIFYILHIIFQFRTGYIASSPT--TFDRGVLVEDRYAIAKRYLSTYFLIDVFAXXXXXX 162
+D+ Y HII +FRT YI S T F RG L+ D IA +YL + F++D A
Sbjct: 127 SDLLYFTHIIIKFRTAYINPSSTMRVFGRGDLITDPKEIAWQYLRSDFVVDAVAALPLPQ 186
Query: 163 XXXXXXXXXXRSSEVAKAKNILMFIVLCQYVPRLIRIRPLYLQITRSAGVITETPWPGAV 222
+ S NIL+ IVL QY PRL I PL +I ++ GV+ +T W GA
Sbjct: 187 ILIWFVIPAIKYSTDEHNNNILVLIVLAQYFPRLYLIFPLTYEIVKTTGVVAKTAWQGAA 246
Query: 223 LILLIYLLASHV 234
+L+Y++ASHV
Sbjct: 247 YNMLLYMIASHV 258
>Os09g0558300 Similar to Cyclic nucleotide-gated channel A (Fragment)
Length = 713
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 108/194 (55%), Gaps = 5/194 (2%)
Query: 47 LHPQGPFLQSWNKIFVLSCIFAVSVDPLFFYIPVIN-----ENNTCWYLDKKLEITASVL 101
L P + WN++F+ SC+FA+ +DP F+Y+P+++ N +C D++L IT +VL
Sbjct: 69 LDPGSSMVLMWNRVFLGSCLFALFIDPFFYYLPLVHVLDESTNRSCIAKDRRLSITITVL 128
Query: 102 RFFTDIFYILHIIFQFRTGYIASSPTTFDRGVLVEDRYAIAKRYLSTYFLIDVFAXXXXX 161
R F D+FY+L+I+ +F T Y+ +G LV D I +RYL T F ID+ A
Sbjct: 129 RTFADLFYMLNIMVKFHTAYVDPKSRVLGKGELVLDLKKIQRRYLRTDFFIDLLATIPLP 188
Query: 162 XXXXXXXXXXXRSSEVAKAKNILMFIVLCQYVPRLIRIRPLYLQITRSAGVITETPWPGA 221
++S+ +++ QY+ R+ I PL QI ++AGV+ ++ W GA
Sbjct: 189 QVTVWIIMPSIKNSDYNIRNTTFALVIMIQYIFRMYLIVPLSNQIIKAAGVVAKSAWLGA 248
Query: 222 VLILLIYLLASHVS 235
LL Y+LASH++
Sbjct: 249 AYNLLYYMLASHIT 262
>Os02g0773400 Ion transport domain containing protein
Length = 772
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 101/191 (52%), Gaps = 3/191 (1%)
Query: 47 LHPQGPFLQSWNKIFVLSCIFAVSVDPLFFYIPVINENNTCWYLDKKLEITASVLRFFTD 106
++P +Q WN+ FV+SC+ A+ +DPLFF++ + ++N C L+ +V+R TD
Sbjct: 171 MNPHAKVVQQWNQFFVISCLVAIFIDPLFFFLLSVQKDNKCIVLNWHFATALAVVRSVTD 230
Query: 107 IFYILHIIFQFRTGYIASSPTTFDRGVLVEDRYAIAKRYLSTYFLIDVFAXXXXXXXXXX 166
Y LH++ QFR Y+A G LV++ IA RYL YFL+D F
Sbjct: 231 AIYFLHMLLQFRLAYVAPESRVVGAGDLVDEPKKIAVRYLRGYFLLDFFVVLPLPQVMIL 290
Query: 167 XXXXXXRSSEVAK-AKNILMFIVLCQYVPRLIRIRPLYLQITRSA--GVITETPWPGAVL 223
A AKN+L VL QYVPR+IR PL + S+ G I E+ W V+
Sbjct: 291 LVIPKYVGLSTANYAKNLLRITVLLQYVPRIIRFVPLLGGQSDSSANGFIFESAWANFVI 350
Query: 224 ILLIYLLASHV 234
LL+++LA HV
Sbjct: 351 NLLMFVLAGHV 361
>Os12g0163000 Similar to Cyclic nucleotide-gated channel A (Fragment)
Length = 648
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 89/164 (54%), Gaps = 5/164 (3%)
Query: 71 VDPLFFYIPVINENNTCWYLDKKLEITASVLRFFTDIFYILHIIFQFRTGYIASSPTTFD 130
VDP++FY+ + +C +D ++ + + +R D+FY+ H+I +FRT ++A S F
Sbjct: 6 VDPMYFYL-LHTGLKSCVTMDMQIGVGVTAVRTVADLFYLAHMILKFRTAFVAPSSRVFG 64
Query: 131 RGVLVEDRYAIAKRYLSTYFLIDVFAXXXXXXXXXXXXXXXXRSSEVAKAKNILMFIVLC 190
RG LV D IA RYL F+ID+ A +S N L IVL
Sbjct: 65 RGELVRDPDQIAIRYLKNDFIIDLAA----MLPIPQVTCIPVNNSSANHTNNTLSMIVLI 120
Query: 191 QYVPRLIRIRPLYLQITRSAGVITETPWPGAVLILLIYLLASHV 234
QY+PR+ I L +I +S+GV+T T W GA LL+Y LASHV
Sbjct: 121 QYIPRVFLIVSLNSKIVKSSGVVTRTAWAGAAYNLLLYTLASHV 164
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.329 0.142 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,527,886
Number of extensions: 224400
Number of successful extensions: 503
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 488
Number of HSP's successfully gapped: 9
Length of query: 242
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 144
Effective length of database: 11,918,829
Effective search space: 1716311376
Effective search space used: 1716311376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 154 (63.9 bits)