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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0527300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cyclic nucleotide-gated channel C (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0219) R2 : 0.0196
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.139 (0.046) R2dN8 : 0.0253 R2N8 : 0.0196
σ : 0.412
deviance : 77.73
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
75.69 0.409 2.96 0.316 0.0427 -0.321 -0.0524 2.04 0.218 17 25.2 88 -- --
77.02 0.412 2.99 0.0691 0.00276 -0.159 0.242 -- 0.147 15.1 26.31 194 -- --
75.69 0.405 2.96 0.311 0.0431 -0.32 -- 2 0.217 17 25.2 87 -- --
77.2 0.412 2.99 0.072 0.0101 -0.143 -- -- 0.149 21.1 26.2 97 -- --
75.76 0.405 2.96 0.299 -- -0.287 -- 2 0.211 -- 25.3 86 -- --
77.39 0.412 2.99 0.0473 0.0498 -- -0.181 -- 0.143 2.38 -- -- -- --
77.51 0.412 2.99 0.0523 0.0492 -- -- -- 0.144 2.05 -- -- -- --
77.21 0.411 2.99 0.0722 -- -0.145 -- -- 0.149 -- 26.2 97 -- --
77.32 0.41 2.99 -- 0.0261 -0.129 -- -- 0.14 21.3 26.3 148 -- --
77.65 0.412 2.99 0.0543 -- -- -- -- 0.145 -- -- -- -- --
77.58 0.412 2.99 -- 0.0502 -- -- -- 0.138 2.07 -- -- -- --
77.34 0.411 2.99 -- -- -0.134 -- -- 0.141 -- 26.2 97 -- --
77.73 0.412 2.99 -- -- -- -- -- 0.139 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 72.11 temperature 10.0 1440 > th dose independent rect. 21 1
4 72.11 temperature 30.0 1440 < th dose independent rect. 21 1
8 72.11 humidity 50.0 1440 > th dose independent rect. 21 1
14 72.11 atmosphere 995.0 1440 > th dose independent rect. 21 1
15 72.11 radiation 1.0 1440 < th dose independent rect. 21 1
35 72.11 temperature 10.0 1440 > th dose independent rect. 22 23
38 72.12 radiation 20.0 1440 < th dose dependent rect. 21 1
41 72.14 temperature 25.0 30 > th dose independent rect. 20 1
43 72.16 temperature 25.0 30 > th dose dependent rect. 20 1
45 72.23 atmosphere 1005.0 30 > th dose dependent rect. 20 1
48 72.26 wind 3.0 30 > th dose independent rect. 20 1
52 72.29 humidity 80.0 30 > th dose independent rect. 20 1
54 72.30 humidity 90.0 30 < th dose independent rect. 20 1
55 72.30 atmosphere 1005.0 30 > th dose independent rect. 20 1
59 72.32 wind 5.0 30 < th dose independent rect. 20 1
61 72.34 wind 9.0 1440 < th dose independent rect. 21 1
66 72.38 wind 1.0 30 > th dose dependent rect. 20 1
69 72.39 temperature 10.0 30 > th dose independent rect. 20 1
71 72.39 temperature 30.0 30 < th dose independent rect. 20 1
72 72.39 humidity 50.0 30 > th dose independent rect. 20 1
76 72.39 atmosphere 1010.0 30 < th dose independent rect. 20 1
78 72.39 radiation 1.0 30 < th dose independent rect. 20 1
83 72.39 precipitation 0.1 30 < th dose independent rect. 20 1
84 72.39 temperature 10.0 30 > th dose independent rect. 21 23
85 72.39 radiation 1.0 30 < th dose dependent rect. 20 1
90 72.39 precipitation 0.1 30 < th dose dependent rect. 20 1
92 72.41 humidity 50.0 30 > th dose dependent rect. 20 1
94 72.42 wind 9.0 30 < th dose dependent rect. 20 1
99 72.50 humidity 90.0 30 < th dose dependent rect. 20 1
102 72.63 wind 9.0 30 < th dose independent rect. 21 23
103 72.63 atmosphere 1015.0 30 < th dose dependent rect. 20 1
109 72.83 temperature 30.0 30 < th dose dependent rect. 20 1
157 73.46 temperature 10.0 720 > th dose dependent rect. 5 4
159 73.54 atmosphere 1005.0 10 > th dose dependent rect. 20 3
161 73.56 temperature 25.0 30 > th dose independent rect. 20 3
164 73.64 radiation 40.0 720 < th dose independent rect. 21 12
166 73.67 temperature 20.0 720 > th dose dependent rect. 5 4
167 73.70 temperature 25.0 720 > th dose independent rect. 5 4
168 73.71 radiation 40.0 720 < th dose independent rect. 5 4
169 73.75 temperature 20.0 30 > th dose dependent rect. 2 1
172 73.76 atmosphere 1005.0 30 > th dose dependent rect. 2 1
177 73.79 temperature 20.0 30 > th dose independent rect. 2 1
178 73.79 temperature 25.0 720 > th dose independent rect. 6 2
179 73.79 radiation 40.0 720 < th dose independent rect. 3 6
180 73.80 atmosphere 1005.0 30 > th dose independent rect. 2 1
187 73.82 wind 3.0 30 < th dose dependent rect. 2 1
191 73.84 wind 3.0 30 < th dose independent rect. 2 1
200 73.88 temperature 10.0 30 > th dose independent rect. 2 1
202 73.88 temperature 30.0 30 < th dose independent rect. 2 1
203 73.88 humidity 50.0 30 > th dose independent rect. 2 1
208 73.88 atmosphere 1010.0 30 < th dose independent rect. 2 1
210 73.88 radiation 1.0 30 < th dose independent rect. 2 1
215 73.88 precipitation 0.1 30 < th dose independent rect. 2 1
217 73.88 temperature 10.0 30 > th dose independent rect. 3 23
218 73.88 radiation 1.0 30 < th dose dependent rect. 2 1
223 73.88 precipitation 0.1 30 < th dose dependent rect. 2 1
226 73.89 humidity 50.0 30 > th dose dependent rect. 2 1
236 73.95 radiation 1.0 720 < th dose dependent rect. 24 7
239 73.97 wind 9.0 1440 < th dose independent rect. 23 1
240 73.97 temperature 10.0 1440 > th dose independent rect. 23 1
243 73.97 temperature 30.0 1440 < th dose independent rect. 23 1
247 73.97 humidity 50.0 1440 > th dose independent rect. 23 1
257 73.97 atmosphere 995.0 1440 > th dose independent rect. 23 1
258 73.97 radiation 1.0 1440 < th dose independent rect. 23 1
278 73.97 temperature 10.0 1440 > th dose independent rect. 24 23
281 73.97 radiation 1.0 1440 < th dose dependent rect. 23 1
292 74.01 humidity 90.0 30 < th dose independent rect. 22 1
293 74.03 temperature 25.0 30 > th dose independent rect. 22 1
294 74.03 temperature 25.0 30 > th dose dependent rect. 22 1
295 74.03 atmosphere 1005.0 30 > th dose dependent rect. 22 1
302 74.07 atmosphere 1005.0 30 > th dose independent rect. 22 1
303 74.07 humidity 90.0 30 < th dose dependent rect. 22 1
305 74.07 atmosphere 1015.0 30 < th dose dependent rect. 2 1
319 74.13 wind 1.0 30 > th dose independent rect. 22 1
321 74.13 precipitation 0.1 30 < th dose independent rect. 22 1
323 74.13 precipitation 0.1 30 < th dose dependent rect. 22 1
326 74.15 wind 3.0 30 < th dose independent rect. 22 1
327 74.15 wind 7.0 30 < th dose independent rect. 22 1
329 74.15 temperature 10.0 30 > th dose independent rect. 22 1
331 74.15 temperature 30.0 30 < th dose independent rect. 22 1
332 74.15 humidity 50.0 30 > th dose independent rect. 22 1
336 74.15 atmosphere 1010.0 30 < th dose independent rect. 22 1
338 74.15 radiation 1.0 30 < th dose independent rect. 22 1
343 74.15 temperature 10.0 30 > th dose independent rect. 23 23
344 74.15 temperature 30.0 30 < th dose dependent rect. 2 1
345 74.15 radiation 1.0 30 < th dose dependent rect. 22 1
351 74.16 wind 9.0 30 < th dose dependent rect. 22 1
353 74.17 humidity 90.0 10 < th dose independent rect. 20 3
357 74.18 wind 1.0 30 > th dose dependent rect. 22 1
362 74.20 humidity 50.0 30 > th dose dependent rect. 22 1
366 74.24 temperature 25.0 30 > th dose dependent rect. 20 3
374 74.28 wind 1.0 30 > th dose independent rect. 2 1
378 74.31 radiation 40.0 720 < th dose independent rect. 23 10
380 74.33 atmosphere 1005.0 30 > th dose independent rect. 20 3
382 74.33 atmosphere 1015.0 30 < th dose dependent rect. 22 1
403 74.41 atmosphere 995.0 30 > th dose independent rect. 21 23
404 74.41 temperature 30.0 30 < th dose dependent rect. 22 1
409 74.43 wind 9.0 30 < th dose independent rect. 23 23
415 74.45 radiation 40.0 720 < th dose independent rect. 19 14
433 74.51 radiation 1.0 720 < th dose independent rect. 24 7
462 74.65 wind 9.0 30 < th dose independent rect. 3 23
463 74.66 wind 1.0 720 > th dose independent rect. 11 1
477 74.70 precipitation 0.1 270 < th dose independent rect. 8 13
478 74.70 precipitation 0.1 30 < th dose independent rect. 21 23
481 74.70 precipitation 0.1 270 < th dose dependent rect. 8 13
482 74.70 precipitation 0.1 30 < th dose dependent rect. 21 23
520 74.73 radiation 40.0 270 < th dose dependent rect. 21 12
525 74.75 atmosphere 1015.0 270 < th dose independent rect. 8 13
532 74.77 humidity 50.0 10 > th dose independent rect. 21 23
536 74.78 radiation 40.0 30 < th dose independent rect. 23 12
564 74.80 humidity 70.0 270 > th dose independent rect. 21 11
583 74.82 temperature 25.0 270 > th dose independent rect. 1 1
584 74.82 temperature 10.0 270 > th dose independent rect. 21 11
585 74.82 temperature 30.0 270 < th dose independent rect. 21 11
586 74.82 humidity 50.0 270 > th dose independent rect. 21 11
588 74.82 atmosphere 995.0 270 > th dose independent rect. 21 11
589 74.82 temperature 10.0 270 > th dose independent rect. 8 13
593 74.82 temperature 10.0 270 > th dose dependent rect. 5 12
595 74.83 wind 1.0 30 > th dose independent rect. 11 12
602 74.84 precipitation 0.1 720 < th dose independent rect. 21 12
604 74.84 wind 1.0 90 > th dose independent rect. 9 14
605 74.84 precipitation 0.1 720 < th dose dependent rect. 21 12
608 74.85 wind 9.0 270 < th dose independent rect. 21 11
616 74.86 precipitation 0.1 30 < th dose independent rect. 11 12
622 74.86 precipitation 0.1 30 < th dose dependent rect. 11 12
623 74.87 temperature 10.0 720 > th dose independent rect. 11 1
624 74.87 humidity 90.0 720 < th dose independent rect. 6 1
625 74.87 atmosphere 995.0 720 > th dose independent rect. 11 1
626 74.87 atmosphere 1015.0 720 < th dose independent rect. 11 1
627 74.87 precipitation 0.1 720 < th dose independent rect. 11 1
629 74.87 temperature 25.0 270 > th dose independent rect. 5 12
630 74.87 temperature 10.0 1440 > th dose independent rect. 12 12
633 74.87 temperature 10.0 1440 > th dose independent rect. 24 12
636 74.87 atmosphere 995.0 1440 > th dose independent rect. 24 12
637 74.87 temperature 10.0 720 > th dose independent rect. 12 23
639 74.87 precipitation 0.1 720 < th dose dependent rect. 11 1
642 74.88 radiation 1.0 720 > th dose independent rect. 11 1
659 74.89 precipitation 0.1 720 < th dose independent rect. 23 1
668 74.89 precipitation 0.1 720 < th dose dependent rect. 23 1
677 74.91 wind 9.0 720 < th dose independent rect. 11 1
678 74.91 atmosphere 1005.0 270 > th dose independent rect. 19 1
681 74.91 wind 9.0 30 < th dose independent rect. 23 12
682 74.91 temperature 10.0 30 > th dose independent rect. 11 12
684 74.91 temperature 10.0 30 > th dose independent rect. 23 12
685 74.91 humidity 50.0 30 > th dose independent rect. 23 12
686 74.91 atmosphere 995.0 30 > th dose independent rect. 23 12
687 74.91 atmosphere 1015.0 30 < th dose independent rect. 11 12
693 74.92 wind 9.0 720 < th dose independent rect. 17 4
695 74.92 precipitation 0.1 30 < th dose independent rect. 23 12
698 74.92 precipitation 0.1 30 < th dose dependent rect. 23 12
701 74.93 radiation 1.0 720 > th dose independent rect. 5 4
703 74.93 wind 1.0 720 > th dose independent rect. 9 12
709 74.94 temperature 10.0 720 > th dose independent rect. 9 3
710 74.94 atmosphere 995.0 720 > th dose independent rect. 9 3
711 74.94 atmosphere 1015.0 720 < th dose independent rect. 9 3
712 74.94 precipitation 0.1 720 < th dose independent rect. 9 3
715 74.94 temperature 30.0 30 < th dose independent rect. 23 12
716 74.94 radiation 1.0 720 > th dose independent rect. 18 15
717 74.94 temperature 10.0 720 > th dose independent rect. 12 21
720 74.94 precipitation 0.1 720 < th dose dependent rect. 9 3
722 74.94 temperature 25.0 90 > th dose dependent rect. 23 20
725 74.95 wind 9.0 720 < th dose independent rect. 15 6
732 74.95 temperature 20.0 10 > th dose dependent rect. 20 9
733 74.96 temperature 10.0 720 > th dose independent rect. 21 3
734 74.96 temperature 30.0 720 < th dose independent rect. 21 3
735 74.96 humidity 50.0 720 > th dose independent rect. 21 3
738 74.96 atmosphere 995.0 720 > th dose independent rect. 21 3
739 74.96 radiation 1.0 720 < th dose independent rect. 21 3
744 74.96 precipitation 0.1 720 < th dose independent rect. 21 3
747 74.96 temperature 10.0 720 > th dose independent rect. 24 21
749 74.96 radiation 1.0 720 < th dose dependent rect. 21 3
754 74.96 precipitation 0.1 720 < th dose dependent rect. 21 3
760 74.97 wind 9.0 720 < th dose independent rect. 9 3
761 74.97 wind 9.0 90 < th dose independent rect. 23 10
762 74.97 temperature 10.0 90 > th dose independent rect. 23 10
763 74.97 humidity 50.0 90 > th dose independent rect. 23 10
764 74.97 atmosphere 995.0 90 > th dose independent rect. 23 10
765 74.97 wind 9.0 30 < th dose independent rect. 11 12
769 74.97 precipitation 0.1 720 < th dose independent rect. 21 20
771 74.97 precipitation 0.1 720 < th dose dependent rect. 21 20
772 74.98 humidity 50.0 720 > th dose independent rect. 9 3
774 74.98 wind 1.0 720 > th dose independent rect. 15 6
775 74.98 precipitation 0.1 90 < th dose independent rect. 23 10
785 74.98 precipitation 0.1 90 < th dose dependent rect. 23 10
787 74.99 radiation 10.0 720 < th dose independent rect. 17 4
788 74.99 precipitation 0.1 720 < th dose independent rect. 5 4
790 74.99 humidity 60.0 720 > th dose independent rect. 3 6
792 74.99 precipitation 0.1 720 < th dose independent rect. 3 6
803 74.99 humidity 50.0 720 > th dose independent rect. 21 18
804 74.99 precipitation 0.1 720 < th dose independent rect. 21 18
805 74.99 temperature 25.0 90 > th dose dependent rect. 1 4
806 74.99 precipitation 0.1 720 < th dose dependent rect. 5 4
807 74.99 precipitation 0.1 720 < th dose dependent rect. 3 6
810 74.99 precipitation 0.1 720 < th dose dependent rect. 21 18
812 75.00 humidity 50.0 720 > th dose independent rect. 11 1
813 75.00 wind 1.0 720 > th dose independent rect. 9 3
814 75.00 wind 9.0 720 < th dose independent rect. 21 3
815 75.00 humidity 80.0 30 > th dose independent rect. 20 3
816 75.00 atmosphere 1005.0 270 > th dose independent rect. 17 4
817 75.00 precipitation 0.1 720 < th dose independent rect. 17 4
819 75.00 precipitation 0.1 720 < th dose independent rect. 15 6
823 75.00 precipitation 0.1 720 < th dose independent rect. 12 21
828 75.00 precipitation 0.1 720 < th dose dependent rect. 17 4
829 75.00 precipitation 0.1 720 < th dose dependent rect. 15 6
830 75.00 precipitation 0.1 720 < th dose dependent rect. 12 21
831 75.01 humidity 60.0 720 > th dose independent rect. 5 4
833 75.01 wind 9.0 720 < th dose independent rect. 3 6
834 75.01 temperature 10.0 720 > th dose independent rect. 3 6
836 75.01 atmosphere 995.0 720 > th dose independent rect. 3 6
837 75.01 precipitation 0.1 270 < th dose independent rect. 1 11
840 75.01 temperature 10.0 720 > th dose independent rect. 9 18
842 75.01 precipitation 0.1 270 < th dose dependent rect. 1 11
844 75.02 atmosphere 1000.0 720 > th dose independent rect. 5 4
848 75.02 atmosphere 995.0 720 > th dose independent rect. 21 18
850 75.03 wind 7.0 720 < th dose independent rect. 5 4
852 75.03 temperature 10.0 720 > th dose independent rect. 5 4
858 75.03 atmosphere 1015.0 720 < th dose independent rect. 5 4
861 75.03 temperature 10.0 720 > th dose independent rect. 15 6
862 75.03 temperature 30.0 90 < th dose independent rect. 23 10
865 75.03 temperature 10.0 720 > th dose independent rect. 21 18
866 75.03 temperature 10.0 720 > th dose independent rect. 9 20
875 75.04 temperature 10.0 270 > th dose independent rect. 1 11
877 75.04 atmosphere 995.0 270 > th dose independent rect. 1 11
878 75.04 atmosphere 1015.0 270 < th dose independent rect. 1 11
879 75.04 temperature 10.0 270 > th dose independent rect. 12 13
881 75.05 temperature 10.0 720 > th dose independent rect. 17 4
886 75.05 temperature 25.0 90 > th dose independent rect. 19 10
893 75.05 temperature 10.0 720 > th dose independent rect. 21 20
894 75.05 precipitation 0.1 720 < th dose independent rect. 24 21
900 75.05 temperature 25.0 270 > th dose dependent rect. 5 11
903 75.05 precipitation 0.1 720 < th dose dependent rect. 24 21
904 75.06 wind 9.0 1440 < th dose independent rect. 3 1
905 75.06 temperature 10.0 1440 > th dose independent rect. 3 1
908 75.06 temperature 30.0 1440 < th dose independent rect. 3 1
912 75.06 humidity 50.0 1440 > th dose independent rect. 3 1
921 75.06 atmosphere 995.0 1440 > th dose independent rect. 3 1
922 75.06 radiation 1.0 1440 < th dose independent rect. 3 1
942 75.06 wind 1.0 720 > th dose independent rect. 17 4
943 75.06 atmosphere 1015.0 720 < th dose independent rect. 17 4
946 75.06 temperature 10.0 1440 > th dose independent rect. 4 23
949 75.06 radiation 1.0 1440 < th dose dependent rect. 3 1
966 75.06 radiation 40.0 720 < th dose dependent rect. 17 4
975 75.07 radiation 40.0 90 < th dose independent rect. 23 10
988 75.08 humidity 50.0 270 > th dose independent rect. 1 11
990 75.08 wind 9.0 720 < th dose independent rect. 24 21