BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0268800 Os06g0268800|AK120796
         (388 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0268800  Protein of unknown function UPF0005 family pro...   609   e-175
Os02g0730600                                                      444   e-125
Os01g0221600  Protein of unknown function UPF0005 family pro...   231   8e-61
Os10g0572100  Protein of unknown function UPF0005 family pro...   188   6e-48
Os02g0673100  Protein of unknown function UPF0005 family pro...   184   1e-46
Os06g0331900  Protein of unknown function UPF0005 family pro...   158   7e-39
Os04g0567200  Protein of unknown function UPF0005 family pro...   154   1e-37
Os04g0417000  Similar to Aluminum-activated malate transporter    145   5e-35
Os01g0737500  Protein of unknown function UPF0005 family pro...   135   4e-32
Os06g0269000                                                       90   3e-18
Os02g0673000  Protein of unknown function UPF0005 family pro...    69   8e-12
>Os06g0268800 Protein of unknown function UPF0005 family protein
          Length = 388

 Score =  609 bits (1571), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 307/372 (82%), Positives = 307/372 (82%)

Query: 17  QLGTLWSTLEDQRGGAREVPLLSSAWXXXXXXXXXXXXXXXXXXXWKEGLXXXXXXXXXX 76
           QLGTLWSTLEDQRGGAREVPLLSSAW                   WKEGL          
Sbjct: 17  QLGTLWSTLEDQRGGAREVPLLSSAWGLPGGGRGGDGGGGGEGGGWKEGLVRRAGAAAAR 76

Query: 77  XXXXXXXXXEELWAFARADPRKAVFAAKVGXXXXXXXXXXXXREPRDIVSHSVWAILTVV 136
                    EELWAFARADPRKAVFAAKVG            REPRDIVSHSVWAILTVV
Sbjct: 77  VWGAVRGAAEELWAFARADPRKAVFAAKVGLALALISLLVFLREPRDIVSHSVWAILTVV 136

Query: 137 VVFEFSIGATFSKGFNRXXXXXXXXXXXXXXXELSKHLGKLEEVILIISIFIVAFFTTLT 196
           VVFEFSIGATFSKGFNR               ELSKHLGKLEEVILIISIFIVAFFTTLT
Sbjct: 137 VVFEFSIGATFSKGFNRGLGTLTAGGLALAVAELSKHLGKLEEVILIISIFIVAFFTTLT 196

Query: 197 KLHPKMKAYEYGFRVFLLTFCYVMVSGYNTGKFTDTAVSRFILIAIGAAVSLGINVGIYP 256
           KLHPKMKAYEYGFRVFLLTFCYVMVSGYNTGKFTDTAVSRFILIAIGAAVSLGINVGIYP
Sbjct: 197 KLHPKMKAYEYGFRVFLLTFCYVMVSGYNTGKFTDTAVSRFILIAIGAAVSLGINVGIYP 256

Query: 257 IWAGQDLHNLVAKNFIGVAKSLEGCVDGYLKCMEYERIPSKILVYQASDDPLYSGYRAAV 316
           IWAGQDLHNLVAKNFIGVAKSLEGCVDGYLKCMEYERIPSKILVYQASDDPLYSGYRAAV
Sbjct: 257 IWAGQDLHNLVAKNFIGVAKSLEGCVDGYLKCMEYERIPSKILVYQASDDPLYSGYRAAV 316

Query: 317 EASAQEETLLGFAIWEPPHGAYKMMKYPWRNFTKVGGALRHCSFAVMALHGCILSEIQKA 376
           EASAQEETLLGFAIWEPPHGAYKMMKYPWRNFTKVGGALRHCSFAVMALHGCILSEIQKA
Sbjct: 317 EASAQEETLLGFAIWEPPHGAYKMMKYPWRNFTKVGGALRHCSFAVMALHGCILSEIQKA 376

Query: 377 ERFLVQKFRELV 388
           ERFLVQKFRELV
Sbjct: 377 ERFLVQKFRELV 388
>Os02g0730600 
          Length = 584

 Score =  444 bits (1141), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/289 (74%), Positives = 231/289 (79%), Gaps = 1/289 (0%)

Query: 87  ELWAFARADPRKAVFAAKVGXXXXXXXXXXXXREPRDIVSHSVWAILTVVVVFEFSIGAT 146
           E+WAFAR DPRK VFAAKV             REP D+ +H+VWAILTVVVVFEFSIGAT
Sbjct: 67  EMWAFARKDPRKPVFAAKVATALALITLLVFLREPTDLANHAVWAILTVVVVFEFSIGAT 126

Query: 147 FSKGFNRXXXXXXXXXXXXXXXELSKHLGKLEEVILIISIFIVAFFTTLTKLHPKMKAYE 206
            SKG NR               ELS  +G    VILII  F+VAF  TLTKLHPKMK YE
Sbjct: 127 LSKGLNRGLGTLTAGGFALAVSELSSSMGNFGNVILIICTFVVAFGATLTKLHPKMKPYE 186

Query: 207 YGFRVFLLTFCYVMVSGYNTGKFTDTAVSRFILIAIGAAVSLGINVGIYPIWAGQDLHNL 266
           YGFRVFLLTFCYV VSGYNTGKF  TA+SRF+LIAIGAAVSL +N+GI+PIWAG+DLHNL
Sbjct: 187 YGFRVFLLTFCYVTVSGYNTGKFIATAISRFLLIAIGAAVSLALNIGIHPIWAGEDLHNL 246

Query: 267 VAKNFIGVAKSLEGCVDGYLKCMEYERIPSKILVYQASDDP-LYSGYRAAVEASAQEETL 325
           VAKNF GVAKSLEGCVDGYLKCMEYER+PS IL YQASDD  LYSG RAAVE+SAQEE L
Sbjct: 247 VAKNFDGVAKSLEGCVDGYLKCMEYERVPSTILTYQASDDDHLYSGCRAAVESSAQEEAL 306

Query: 326 LGFAIWEPPHGAYKMMKYPWRNFTKVGGALRHCSFAVMALHGCILSEIQ 374
           LGFAIWEPPHG YKMMKYPW N+TKVGGALRHCSF+VMALHGCILSEIQ
Sbjct: 307 LGFAIWEPPHGPYKMMKYPWMNYTKVGGALRHCSFSVMALHGCILSEIQ 355
>Os01g0221600 Protein of unknown function UPF0005 family protein
          Length = 524

 Score =  231 bits (588), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 120/291 (41%), Positives = 169/291 (58%), Gaps = 3/291 (1%)

Query: 87  ELWAFARADPRKAVFAAKVGXXXXXXXXXXXXREPRDIV-SHSVWAILTVVVVFEFSIGA 145
           ++W FAR D  +  FA KVG            R P DI  ++ +W+ILTV ++FE+++GA
Sbjct: 41  DVWDFARQDTNRVTFALKVGLACLLVSLLILFRAPYDIFGANIIWSILTVAIMFEYTVGA 100

Query: 146 TFSKGFNRXXXXXXXXXXXXXXXELSKHLGKLEEVILI-ISIFIVAFFTTLTKLHPKMKA 204
           TF++GFNR               +++   G + E  +I  SIF++   T+  KL P +  
Sbjct: 101 TFNRGFNRAVGSVFAGVFAVVVIQVAMSSGHIAEPYIIGFSIFLIGAVTSFMKLWPSLVP 160

Query: 205 YEYGFRVFLLTFCYVMVSGYNTGKFTDTAVSRFILIAIGAAVSLGINVGIYPIWAGQDLH 264
           YEYGFRV L T+C ++VSGY  G    TA+ R   IAIGA +++ +NV I PIWAG+ LH
Sbjct: 161 YEYGFRVILFTYCLIIVSGYRMGNPIRTAMDRLYSIAIGALIAVLVNVFICPIWAGEQLH 220

Query: 265 NLVAKNFIGVAKSLEGCVDGYLKCMEYERIP-SKILVYQASDDPLYSGYRAAVEASAQEE 323
             +  +F  +A SLE CV  YL     E    SK ++    D+P +   RA + +SA+ +
Sbjct: 221 RELVNSFNSLADSLEECVKKYLSDDGSEHPEFSKTVMDNFPDEPAFRKCRATLNSSAKFD 280

Query: 324 TLLGFAIWEPPHGAYKMMKYPWRNFTKVGGALRHCSFAVMALHGCILSEIQ 374
           +L   A WEPPHG +K   YPW  + KVG  LRHC++ VMALHGC+ SEIQ
Sbjct: 281 SLANSAKWEPPHGRFKHFFYPWAEYVKVGNVLRHCAYEVMALHGCVHSEIQ 331
>Os10g0572100 Protein of unknown function UPF0005 family protein
          Length = 529

 Score =  188 bits (477), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 104/290 (35%), Positives = 159/290 (54%), Gaps = 9/290 (3%)

Query: 89  WAFARADPRKAVFAAKVGXXXXXXXXXXXXREP--RDIVSHSVWAILTVVVVFEFSIGAT 146
           W   R DPR+A+ A KVG             EP  + +  +++WA++TVVVV EF+ GAT
Sbjct: 36  WGIGREDPRRAIHALKVGTALTLVSLLYIL-EPLFKGVGKNAMWAVMTVVVVLEFTAGAT 94

Query: 147 FSKGFNRXXXXXXXXXXXXXXXELSKHLGKLEEVILI-ISIFIVAFFTTLTKLHPKMKA- 204
             KG NR                ++   GK+   + +  S+F++ F  T  +  P +K  
Sbjct: 95  ICKGLNRGLGTILAGSLAFIIELVAVRSGKVFRALFVGSSVFLIGFAATYLRFFPSIKKN 154

Query: 205 YEYGFRVFLLTFCYVMVSGYNTGKFTDTAVSRFILIAIGAAVSLGINVGIYPIWAGQDLH 264
           Y+YG  +FLLTF  + VS +        A  R   IAIG A+ L +++ + P W+G+DLH
Sbjct: 155 YDYGVVIFLLTFNLITVSSFRQEDVVPLARDRLSTIAIGCAICLFMSLFVLPNWSGEDLH 214

Query: 265 NLVAKNFIGVAKSLEGCVDGYLKCMEYERIPSKILVYQASDDPLYSGYRAAVEASAQEET 324
           +   + F G+A+S+E CV  Y +  + +    KIL  QAS   ++ GYRA +++ + +ET
Sbjct: 215 SSTVRKFEGLARSIEACVTEYFQDQDKD---DKILDKQASRASIHIGYRAVLDSKSSDET 271

Query: 325 LLGFAIWEPPHGAYKMMKYPWRNFTKVGGALRHCSFAVMALHGCILSEIQ 374
           L  +A WEP H + +   YPW+ + K+G  LRH ++ V ALHGC+ SEIQ
Sbjct: 272 LAHYASWEPRH-SMQCYSYPWQKYVKIGSVLRHFAYTVAALHGCLESEIQ 320
>Os02g0673100 Protein of unknown function UPF0005 family protein
          Length = 488

 Score =  184 bits (467), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 158/294 (53%), Gaps = 18/294 (6%)

Query: 87  ELWAFARADPRKAVFAAKVGXXXXXXXXXXXXREPRDIVS-HSVWAILTVVVVFEFSIGA 145
           ++W     DPR+AV + KVG            R   D V  +++WA++TVVVVFE+++G 
Sbjct: 59  KVWKIGADDPRRAVHSLKVGLALTLVSIVYYTRPVYDGVGGNAMWAVMTVVVVFEYTVGG 118

Query: 146 TFSKGFNRXXXXXXXXXXXXXXXELSKHLG-KLEEVILIISIFIVAFFTTLTKLHPKMKA 204
              KGFNR                ++   G KLE  IL  S+F++A   T ++  P +KA
Sbjct: 119 CMYKGFNRAVATASAGLLALGVNWVADKSGDKLEPFILSGSLFLLAAAATFSRFIPTVKA 178

Query: 205 -YEYGFRVFLLTFCYVMVSGYNTGKFTDTAVSRFILIAIGAAVSLGINVGIYPIWAGQDL 263
            ++YG  +F+LTF  V VSGY   +  D A  R   I IG  + L + V I+P+WAGQ+L
Sbjct: 179 RFDYGVTIFILTFSLVAVSGYRVDQLLDLAQQRMSTIGIGIVICLAVCVVIWPVWAGQEL 238

Query: 264 HNLVAKNFIGVAKSLEGCVDGYLKCMEYERIPSKILVYQASDDPLYSGYRAAVEASAQEE 323
           H L  +N   +A ++EGCV+ Y          +K    ++       GY+  + + A E+
Sbjct: 239 HLLTVRNMEKLAGAVEGCVEDYFA--------AKPAAAKS------EGYKCVLNSKASED 284

Query: 324 TLLGFAIWEPPHGAYKMMKYPWRNFTKVGGALRHCSFAVMALHGCILSEIQKAE 377
           +    A WEPPHG +   ++P+  +TKVG A+RHC++ V AL+ C+ +E+Q  E
Sbjct: 285 SQANLARWEPPHGRFG-FRHPYAQYTKVGAAMRHCAYCVEALNSCVRAEVQAPE 337
>Os06g0331900 Protein of unknown function UPF0005 family protein
          Length = 668

 Score =  158 bits (399), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 138/284 (48%), Gaps = 7/284 (2%)

Query: 89  WAFARADPRKAVFAAKVGXXXXXXXXXXXXREPRDIVSHS-VWAILTVVVVFEFSIGATF 147
           W     DPR+ V   KV             R        + +WA+LTVVVVFE+++G   
Sbjct: 71  WKVGADDPRRVVHGFKVALALTLCSAFYYVRPLYVFTGQTAMWAVLTVVVVFEYTVGGCM 130

Query: 148 SKGFNRXXXXXXXXXXXXXXXELSKHLGK-LEEVILIISIFIVAFFTTLTKLHPKMKA-Y 205
            KG NR                ++   G   E  +L  S+F++A   + ++  P +KA +
Sbjct: 131 YKGLNRAMATVAGGALALGVHWVADKSGDDAEPFVLTASLFVLAAAASFSRFIPTLKARF 190

Query: 206 EYGFRVFLLTFCYVMVSGYNTGKFTDTAVSRFILIAIGAAVSLGINVGIYPIWAGQDLHN 265
           +YG  +F+LT+  V VSGY        A  R I IAIGA +   +   ++P+WAGQ+LH 
Sbjct: 191 DYGVTIFILTYSLVAVSGYRVDTLVTMAQQRLITIAIGAFICFAVCTLVFPVWAGQELHV 250

Query: 266 LVAKNFIGVAKSLEGCVDGYLKCMEYERIPSKILVYQASDDPLYSGYRAAVEASAQEETL 325
           LVA+N   +A ++E CVD Y    E+           +       GYRA + A A E++L
Sbjct: 251 LVARNMDKLAAAIEACVDDYFSSAEHAGGGGDAATALSEK---ARGYRAVLNAKASEDSL 307

Query: 326 LGFAIWEPPHGAYKMMKYPWRNFTKVGGALRHCSFAVMALHGCI 369
              A WEP HG +   ++P+  +  VG A+R C++ + AL  C+
Sbjct: 308 ANLARWEPGHGKFG-FRHPYGQYQNVGAAMRCCAYCIDALAACV 350
>Os04g0567200 Protein of unknown function UPF0005 family protein
          Length = 513

 Score =  154 bits (388), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 152/301 (50%), Gaps = 20/301 (6%)

Query: 88  LWAFARADPRKAVFAAKVGXXXXXXXXXXXXREPRDIVS-HSVWAILTVVVVFEFSIGAT 146
           +W     DPR+AV   KVG            R   D V   ++WA++TVVVVFEF++G  
Sbjct: 61  VWKIGADDPRRAVHGVKVGLALALVSVFYYTRPLYDGVGGAAMWAVMTVVVVFEFTVGGC 120

Query: 147 FSKGFNRXXXXXXXXXXXXXXXELSKHLG-KLEEVILIISIFIVAFFTTLTKLHPKMKA- 204
             KGFNR                ++   G KLE V+   S+F++A   T ++  P +KA 
Sbjct: 121 VYKGFNRATATVSAGAVALGVHWIASKSGDKLEPVVRSGSVFLLAAAATFSRFIPTVKAR 180

Query: 205 YEYGFRVFLLTFCYVMVSGYNTGKFTDTAVSRFILIAIGAAVSLGINVGIYPIWAGQDLH 264
           ++YG  +F+LT+  V VSGY        A  R   IAIG  + L + + I P+WAGQ+LH
Sbjct: 181 FDYGVTIFILTYSLVAVSGYRVDALVAMAQQRVSTIAIGIFICLAVCLLICPVWAGQELH 240

Query: 265 NLVAKNFIGVAKSLEGCVDGYLKC-------MEYERIPSKILVYQASDDPLYSGYRAAVE 317
            L A+N   +A ++E CV+GY           EY+R P+     +        GY+  + 
Sbjct: 241 RLTARNMDKLAGAVEACVEGYFVAGEEEAAGPEYKRRPAAAAAAE--------GYKCVLN 292

Query: 318 ASAQEETLLGFAIWEPPHGAYKMMKYPWRNFTKVGGALRHCSFAVMALHGCILS-EIQKA 376
           + A E+     A WEP HG +   ++P+  +  VG A+RHC++ V AL GCI S E Q  
Sbjct: 293 SKASEDAQANLARWEPAHGRFG-FRHPYAQYKAVGAAMRHCAYCVEALSGCIRSAEAQSP 351

Query: 377 E 377
           E
Sbjct: 352 E 352
>Os04g0417000 Similar to Aluminum-activated malate transporter
          Length = 455

 Score =  145 bits (366), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 136/284 (47%), Gaps = 12/284 (4%)

Query: 91  FARADPRKAVFAAKVGXXXXXXXXXXXXREP-RDIVSHSVWAILTVVVVFEFSIGATFSK 149
            A  DPR+   + KVG                +     ++WA+LTVVVV E+++G T SK
Sbjct: 59  IAADDPRRVAHSLKVGLALTLVSVLYYVTPLFKGFGVSTLWAVLTVVVVMEYTVGGTLSK 118

Query: 150 GFNRXXXXXXXXXXXXXXXELSKHLG-KLEEVILIISIFIVAFFTTLTKLHPKMKA-YEY 207
           G NR               +++   G + E ++L + +F++A   T ++  P++KA Y+Y
Sbjct: 119 GLNRAFATLVAGFIAVGAHQVANRCGAQGEPILLAVFVFLLASAATFSRFIPEIKARYDY 178

Query: 208 GFRVFLLTFCYVMVSGYNTGKFTDTAVSRFILIAIGAAVSLGINVGIYPIWAGQDLHNLV 267
           G  +F+LTF  V VS Y   +    A  RF  I +G A  L   + + P+WAG+DLH L 
Sbjct: 179 GVTIFILTFSLVAVSSYRVEELIQLAHQRFSTIVVGVATCLCTTIFVMPVWAGEDLHKLA 238

Query: 268 AKNFIGVAKSLEGCVDGYLKCMEYERIPSKILVYQASDDPLYSGYRAAVEASAQEETLLG 327
           A N   +A  LEG        ME E                   Y++ + + A E++L  
Sbjct: 239 AGNLDKLADFLEG--------METECFGESATSESLEGKAFLQAYKSILNSKATEDSLCN 290

Query: 328 FAIWEPPHGAYKMMKYPWRNFTKVGGALRHCSFAVMALHGCILS 371
           FA WEP HG +   K+PW  + K+G   R C+ ++ A+   +++
Sbjct: 291 FARWEPGHGKFS-FKHPWSQYQKIGALSRQCASSMEAMASYVIT 333
>Os01g0737500 Protein of unknown function UPF0005 family protein
          Length = 310

 Score =  135 bits (341), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 88/253 (34%), Positives = 125/253 (49%), Gaps = 22/253 (8%)

Query: 95  DPRKAVFAAKVGXXXXXXXXXXXXREP-RDIVSHSVWAILTVVVVFEFSIGATFSKGFNR 153
           D  +  FA K G             EP R   ++ +W+ILTV ++FE+++GA+F++GFNR
Sbjct: 61  DAGRVAFALKAGLAMLLASLLVLVGEPFRLFGTNIIWSILTVGIMFEYTVGASFNRGFNR 120

Query: 154 XXXXXXXXXXXXXXXELSKHLGKLEEVILI-ISIFIVAFFTTLTKLHPKMKAYEYGFRVF 212
                           +S   G + E  +I +SIF+V   T+  K  P +  YEYGFRV 
Sbjct: 121 AVGSMVAGVVAIAVIWISLRCGSVAEPYVIGLSIFLVGAVTSFVKQLPALAPYEYGFRVI 180

Query: 213 LLTFCYVMVSGYNTGKFTDTAVSRFILIAIGAAVSLGINVGIYPIWAGQDLHNLVAKNFI 272
           L T+C +MVS Y  G+     + R   IAIGA ++L +NV I+P WAG+ LH  +  +F 
Sbjct: 181 LFTYCLIMVSVYRVGEPVAAGLDRLYAIAIGAVLALLVNVLIFPAWAGEQLHRELVASFA 240

Query: 273 GVAKSLEGCVDGYLKCMEYERIPSKILVYQASD--DPLYSGYRAAVEASAQEETLL---- 326
            VA SL  CV  YL   E            A D  +P     RA + ASA+ E+L+    
Sbjct: 241 AVADSLHDCVRSYLSGDE-----------TAVDGGEPAIEKCRAILNASARIESLVRLPY 289

Query: 327 ---GFAIWEPPHG 336
                 I+  PHG
Sbjct: 290 ARACLCIYCTPHG 302
>Os06g0269000 
          Length = 152

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/127 (51%), Positives = 68/127 (53%), Gaps = 2/127 (1%)

Query: 17  QLGTLWSTLEDQRGGAREVPLLSSAWXXXXXXXXXXXXXXXXXXXWKEGLXXXXXXXXXX 76
           QLG+LWS LEDQRGGA E  L+   +                    KEGL          
Sbjct: 11  QLGSLWSALEDQRGGAHEEELVP--FLLSSSSSASWGGLPGAREREKEGLLRRAGAAVER 68

Query: 77  XXXXXXXXXEELWAFARADPRKAVFAAKVGXXXXXXXXXXXXREPRDIVSHSVWAILTVV 136
                    EELWA ARADPRKAVFAAKVG            REPRDIVSHSVWAILTVV
Sbjct: 69  GWGAARAAAEELWALARADPRKAVFAAKVGLALALISLLVFVREPRDIVSHSVWAILTVV 128

Query: 137 VVFEFSI 143
           VVFEFSI
Sbjct: 129 VVFEFSI 135
>Os02g0673000 Protein of unknown function UPF0005 family protein
          Length = 226

 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 195 LTKLHPKMKA-YEYGFRVFLLTFCYVMVSGYNTGKFTDTAVSRFILIAIGAAVSLGINVG 253
            ++  P + A ++YG  +F++T+ +V VSGY         + R   IAIG  + L +   
Sbjct: 28  FSRFIPTVNARFDYGVSIFVMTYSFVAVSGYRVDDLAALVLDRIATIAIGVIICLAVCTL 87

Query: 254 IYPIWAGQDLHNLVAKNFIGVAKSLEGCVDGYL 286
           I P+WAGQ+L  L A+N   +A ++E CV+ Y 
Sbjct: 88  ICPVWAGQELGLLTARNMEKLASAVEACVEDYF 120
  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.139    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,807,259
Number of extensions: 319463
Number of successful extensions: 912
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 880
Number of HSP's successfully gapped: 11
Length of query: 388
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 285
Effective length of database: 11,657,759
Effective search space: 3322461315
Effective search space used: 3322461315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)