Os04g0567200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0005 family protein.
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Os04g0567200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0005 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.04 | 0.399 | 3.16 | 0.655 | 0.0902 | 0.749 | -0.0556 | -5.67 | 0.0985 | 14.8 | 30 | 300 | -- | -- |
| 75.08 | 0.407 | 3.22 | 0.136 | 0.0554 | 0.0276 | 0.125 | -- | 0.0628 | 11.3 | 30 | 300 | -- | -- |
| 72.05 | 0.395 | 3.16 | 0.653 | 0.0898 | 0.748 | -- | -5.66 | 0.0984 | 14.6 | 29.99 | 304 | -- | -- |
| 74.81 | 0.403 | 3.22 | 0.157 | 0.0453 | 0.116 | -- | -- | 0.0524 | 11.1 | 30.58 | 416 | -- | -- |
| 72.46 | 0.396 | 3.16 | 0.619 | -- | 0.675 | -- | -5.38 | 0.0964 | -- | 29.9 | 300 | -- | -- |
| 75.11 | 0.406 | 3.22 | 0.133 | 0.0511 | -- | 0.125 | -- | 0.0632 | 10.8 | -- | -- | -- | -- |
| 75.17 | 0.406 | 3.22 | 0.138 | 0.0504 | -- | -- | -- | 0.0636 | 10.9 | -- | -- | -- | -- |
| 74.9 | 0.403 | 3.22 | 0.151 | -- | 0.134 | -- | -- | 0.0511 | -- | 30.8 | 428 | -- | -- |
| 75.36 | 0.404 | 3.22 | -- | 0.0371 | 0.118 | -- | -- | 0.0427 | 12.4 | 30.69 | 419 | -- | -- |
| 75.33 | 0.406 | 3.22 | 0.137 | -- | -- | -- | -- | 0.0633 | -- | -- | -- | -- | -- |
| 75.68 | 0.407 | 3.22 | -- | 0.0493 | -- | -- | -- | 0.0483 | 10.7 | -- | -- | -- | -- |
| 75.49 | 0.405 | 3.22 | -- | -- | 0.116 | -- | -- | 0.037 | -- | 30.77 | 427 | -- | -- |
| 75.83 | 0.406 | 3.22 | -- | -- | -- | -- | -- | 0.0481 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.09 | humidity | 70.0 | 90 | < th | dose independent | rect. | 17 | 1 |
| 2 | 68.14 | humidity | 70.0 | 30 | < th | dose independent | rect. | 17 | 3 |
| 16 | 68.20 | wind | 1.0 | 30 | < th | dose independent | rect. | 17 | 1 |
| 27 | 68.20 | wind | 1.0 | 30 | < th | dose dependent | rect. | 17 | 1 |
| 38 | 68.21 | humidity | 70.0 | 90 | < th | dose dependent | rect. | 17 | 2 |
| 77 | 68.46 | humidity | 90.0 | 90 | > th | dose independent | rect. | 8 | 2 |
| 79 | 68.54 | wind | 5.0 | 10 | > th | dose independent | rect. | 10 | 1 |
| 83 | 68.54 | wind | 5.0 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 87 | 68.59 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 8 | 2 |
| 88 | 68.60 | wind | 7.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 118 | 68.72 | wind | 7.0 | 90 | > th | dose independent | rect. | 8 | 1 |
| 151 | 69.37 | wind | 9.0 | 90 | > th | dose dependent | rect. | 21 | 13 |
| 224 | 70.55 | humidity | 50.0 | 270 | < th | dose dependent | rect. | 14 | 4 |
| 261 | 70.62 | humidity | 50.0 | 270 | < th | dose independent | rect. | 14 | 4 |
| 281 | 70.65 | wind | 1.0 | 10 | < th | dose independent | rect. | 14 | 4 |
| 329 | 70.87 | humidity | 50.0 | 270 | < th | dose dependent | sin | 12 | NA |
| 374 | 71.07 | humidity | 50.0 | 270 | < th | dose independent | sin | 12 | NA |
| 376 | 71.08 | temperature | 30.0 | 270 | > th | dose independent | rect. | 15 | 1 |
| 401 | 71.36 | temperature | 30.0 | 270 | > th | dose independent | rect. | 14 | 19 |
| 444 | 71.46 | wind | 3.0 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 457 | 71.54 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 477 | 71.58 | temperature | 30.0 | 270 | < th | dose independent | sin | 14 | NA |
| 482 | 71.65 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 486 | 71.68 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 487 | 71.68 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 490 | 71.70 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 491 | 71.71 | humidity | 50.0 | 270 | > th | dose independent | sin | 13 | NA |
| 527 | 71.83 | temperature | 30.0 | 270 | > th | dose independent | sin | 15 | NA |
| 531 | 71.85 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 21 | 23 |
| 537 | 71.88 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 23 |
| 553 | 71.89 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 585 | 71.96 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 6 |
| 593 | 72.00 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 598 | 72.03 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 599 | 72.03 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 16 |
| 612 | 72.05 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 20 |
| 623 | 72.08 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 20 | 1 |
| 630 | 72.09 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 661 | 72.10 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 666 | 72.12 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 667 | 72.12 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 669 | 72.13 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 689 | 72.16 | wind | 5.0 | 10 | < th | dose independent | rect. | 20 | 1 |
| 690 | 72.16 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 691 | 72.16 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 697 | 72.16 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 702 | 72.17 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 704 | 72.17 | wind | 7.0 | 10 | < th | dose dependent | rect. | 20 | 1 |
| 714 | 72.18 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 20 | 1 |
| 721 | 72.19 | humidity | 90.0 | 10 | < th | dose independent | rect. | 20 | 1 |
| 731 | 72.20 | wind | 1.0 | 10 | > th | dose independent | rect. | 20 | 1 |
| 736 | 72.20 | temperature | 10.0 | 10 | > th | dose independent | rect. | 20 | 1 |
| 740 | 72.20 | temperature | 30.0 | 10 | < th | dose independent | rect. | 20 | 1 |
| 742 | 72.20 | humidity | 50.0 | 10 | > th | dose independent | rect. | 20 | 1 |
| 748 | 72.20 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 20 | 1 |
| 752 | 72.20 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 20 | 1 |
| 756 | 72.20 | radiation | 1.0 | 10 | < th | dose independent | rect. | 20 | 1 |
| 766 | 72.20 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 20 | 1 |
| 771 | 72.20 | temperature | 10.0 | 10 | > th | dose independent | rect. | 21 | 23 |
| 776 | 72.20 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 777 | 72.20 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 20 | 1 |
| 788 | 72.20 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 20 | 1 |
| 797 | 72.21 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 810 | 72.22 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 21 | 23 |
| 814 | 72.22 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 815 | 72.22 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 818 | 72.23 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 821 | 72.23 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 826 | 72.23 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 832 | 72.23 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 833 | 72.23 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 862 | 72.23 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 865 | 72.23 | wind | 1.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 866 | 72.23 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 896 | 72.25 | temperature | 30.0 | 1440 | < th | dose independent | sin | 15 | NA |
| 930 | 72.27 | wind | 9.0 | 90 | > th | dose independent | rect. | 19 | 15 |
| 948 | 72.29 | temperature | 30.0 | 270 | < th | dose independent | rect. | 9 | 12 |
| 956 | 72.30 | temperature | 30.0 | 270 | < th | dose independent | no | NA | NA |
| 962 | 72.30 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 19 | 9 |