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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0737500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function UPF0005 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.96 (0.0585) R2 : 0.641
β1 : -- (--) R2dD : -- R2D : --
β2 : 4.93 (0.186) R2dC : 0.893 R2C : 0.554
β3 : -1.49 (0.185) R2dE : 0.0814 R2E : -0.273
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.434 (0.123) R2dN8 : 0.0114 R2N8 : -0.00149
σ : 1.09
deviance : 546.74
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_____
C
peak time of C : 8.36
E
wheather : temperature
threshold : 19.2
memory length : 206
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 21.7
open length of G : 19.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
513.04 1.06 4.89 1.08 4.66 -1.11 -2.01 3.04 0.607 8.27 20.4 203 21.4 19.5
552.55 1.09 4.92 1.03 4.57 -1.11 -1.57 -- 0.567 8.22 19.6 218 21.5 19.9
522.72 1.06 4.89 0.999 4.61 -1.14 -- 2.66 0.574 8.31 20.46 210 21.3 20
537.59 1.08 4.97 0.848 4.98 -1.64 -- -- 0.466 8.37 19.2 220 21.6 19.5
712.93 1.24 5.19 1.28 -- 5.31 -- 2.48 0.429 -- 14.8 682 19.2 15.2
612.46 1.16 5.01 0.244 4.06 -- -0.661 -- 0.297 8.05 -- -- -- --
613.77 1.16 5.01 0.226 4.06 -- -- -- 0.297 8.06 -- -- -- --
620.16 1.16 5.2 0.173 -- 7.07 -- -- 0.189 -- 14.74 855 17.1 16.1
546.74 1.09 4.96 -- 4.93 -1.49 -- -- 0.434 8.36 19.2 206 21.7 19.4
1514.49 1.82 5.12 0.263 -- -- -- -- 0.348 -- -- -- -- --
615.11 1.16 5.02 -- 4.06 -- -- -- 0.272 8.05 -- -- -- --
611.86 1.15 5.15 -- -- 6.52 -- -- 0.184 -- 14.76 853 17.1 15.8
1516.31 1.82 5.12 -- -- -- -- -- 0.319 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 522.07 temperature 20 270 > th dose independent rect. 21 19
4 523.86 temperature 20 270 > th dose independent rect. 9 18
5 524.21 temperature 20 90 > th dose independent rect. 23 18
15 527.13 temperature 20 270 > th dose independent rect. 21 6
17 528.73 temperature 15 270 > th dose dependent rect. 21 6
18 529.08 temperature 20 270 > th dose independent rect. 22 4
36 532.91 temperature 20 270 > th dose independent rect. 23 2
40 533.85 temperature 10 270 > th dose dependent rect. 9 17
116 541.31 temperature 20 4320 < th dose dependent rect. 11 1
117 541.40 temperature 15 1440 > th dose independent rect. 1 6
122 541.64 temperature 20 10 > th dose independent rect. 9 20
138 542.47 humidity 90 270 < th dose independent rect. 9 17
140 542.55 humidity 50 14400 > th dose independent rect. 1 8
142 542.71 temperature 15 4320 > th dose independent rect. 3 4
149 542.99 temperature 20 10 > th dose independent rect. 11 18
154 543.20 temperature 20 270 < th dose independent rect. 11 21
175 544.19 temperature 20 90 > th dose independent rect. 13 15
185 544.40 temperature 20 4320 > th dose independent rect. 12 7
188 544.43 temperature 15 4320 > th dose independent rect. 3 14
198 544.62 temperature 20 10 > th dose independent rect. 23 6
201 544.70 temperature 20 10 > th dose independent rect. 13 16
204 544.84 wind 3 43200 < th dose dependent rect. 15 1
218 545.26 wind 3 43200 < th dose dependent rect. 13 6
223 545.34 temperature 15 4320 > th dose independent rect. 3 10
227 545.43 temperature 20 4320 < th dose independent rect. 12 7
233 545.62 temperature 20 90 < th dose independent rect. 24 23
239 545.75 temperature 20 4320 < th dose independent rect. 11 9
251 546.05 temperature 20 4320 < th dose independent rect. 9 11
253 546.08 wind 3 43200 < th dose dependent rect. 13 4
262 546.13 temperature 10 270 > th dose dependent rect. 20 21
267 546.24 wind 9 14400 < th dose independent rect. 3 1
270 546.25 temperature 20 720 < th dose independent rect. 9 17
291 546.53 temperature 20 4320 < th dose dependent rect. 9 12
308 546.90 temperature 20 4320 > th dose independent rect. 12 2
309 546.90 temperature 20 720 < th dose independent rect. 15 2
312 546.93 temperature 20 720 < th dose independent rect. 12 5
326 547.08 temperature 20 4320 < th dose independent rect. 12 2
341 547.23 wind 3 43200 < th dose independent rect. 15 1
348 547.33 temperature 20 720 < th dose dependent rect. 13 4
375 547.68 radiation 30 43200 < th dose independent rect. 17 8
391 547.93 temperature 15 4320 < th dose independent rect. 9 4
394 547.94 wind 3 43200 > th dose independent rect. 15 1
398 547.97 temperature 10 270 > th dose dependent rect. 21 19
400 547.99 temperature 20 10 > th dose dependent rect. 23 6
407 548.06 temperature 20 270 < th dose independent rect. 21 23
427 548.24 temperature 15 4320 < th dose independent rect. 9 2
456 548.44 temperature 20 4320 < th dose independent rect. 9 7
464 548.54 temperature 20 4320 > th dose independent rect. 9 7
468 548.61 temperature 15 4320 > th dose independent sin 2 NA
472 548.62 temperature 15 4320 < th dose independent rect. 4 10
515 549.02 temperature 20 270 > th dose independent no NA NA
522 549.07 wind 9 43200 < th dose independent rect. 1 3
527 549.12 temperature 15 4320 < th dose independent rect. 2 12
528 549.12 temperature 15 4320 < th dose independent rect. 2 15
538 549.21 wind 3 43200 < th dose independent rect. 17 1
556 549.32 temperature 15 4320 < th dose independent sin 2 NA
569 549.42 temperature 15 4320 < th dose independent rect. 4 13
571 549.44 wind 9 4320 < th dose independent rect. 9 1
590 549.60 temperature 20 270 < th dose independent no NA NA
628 549.92 wind 3 43200 > th dose independent rect. 17 1
639 549.98 humidity 60 270 > th dose dependent rect. 3 19
658 550.11 temperature 20 720 < th dose independent sin 18 NA
673 550.17 humidity 50 14400 < th dose independent rect. 8 1
691 550.17 humidity 50 14400 < th dose dependent rect. 8 1
722 550.26 wind 1 43200 > th dose independent rect. 11 8
734 550.32 wind 1 43200 < th dose independent rect. 11 9
740 550.37 wind 1 43200 < th dose independent rect. 6 17
756 550.49 temperature 20 720 < th dose independent rect. 14 12
792 550.69 radiation 1 90 < th dose independent rect. 23 16
818 550.85 wind 1 43200 < th dose dependent rect. 9 11
823 550.91 wind 1 43200 < th dose independent sin 21 NA
838 551.02 temperature 20 4320 > th dose independent rect. 9 2
855 551.13 wind 1 43200 > th dose independent rect. 6 15
859 551.15 wind 1 43200 > th dose independent rect. 6 17
877 551.23 temperature 15 4320 < th dose independent rect. 6 11
908 551.40 temperature 20 270 < th dose independent rect. 17 23
926 551.48 wind 1 43200 > th dose independent sin 21 NA
934 551.52 temperature 20 720 > th dose independent rect. 13 6
978 551.84 radiation 1 90 < th dose independent rect. 23 9