Os06g0268800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0005 family protein.
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Os06g0268800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0005 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.79 | 0.311 | 9.81 | -0.0968 | 1.26 | -0.444 | 0.01 | 0.919 | 0.0528 | 9.34 | 24.8 | 68 | -- | -- |
| 46.55 | 0.32 | 9.78 | 0.165 | 1.23 | -0.365 | -0.254 | -- | 0.176 | 9.66 | 24.2 | 72 | -- | -- |
| 43.79 | 0.308 | 9.81 | -0.0958 | 1.26 | -0.444 | -- | 0.917 | 0.053 | 9.34 | 24.8 | 67 | -- | -- |
| 46.19 | 0.317 | 9.78 | 0.136 | 1.24 | -0.379 | -- | -- | 0.193 | 9.84 | 23.73 | 103 | -- | -- |
| 128.68 | 0.531 | 9.84 | -0.104 | -- | -0.612 | -- | 0.442 | 0.0969 | -- | 23.1 | 32 | -- | -- |
| 55.88 | 0.35 | 9.74 | 0.296 | 1.29 | -- | -0.286 | -- | 0.367 | 10.2 | -- | -- | -- | -- |
| 56.21 | 0.351 | 9.74 | 0.285 | 1.29 | -- | -- | -- | 0.366 | 10.1 | -- | -- | -- | -- |
| 129.73 | 0.53 | 9.83 | 0.0023 | -- | -0.617 | -- | -- | 0.125 | -- | 23.11 | 24 | -- | -- |
| 46.58 | 0.318 | 9.78 | -- | 1.24 | -0.399 | -- | -- | 0.178 | 9.79 | 23.8 | 102 | -- | -- |
| 157.41 | 0.586 | 9.77 | 0.267 | -- | -- | -- | -- | 0.364 | -- | -- | -- | -- | -- |
| 58.34 | 0.357 | 9.75 | -- | 1.29 | -- | -- | -- | 0.334 | 10.1 | -- | -- | -- | -- |
| 129.73 | 0.53 | 9.83 | -- | -- | -0.618 | -- | -- | 0.125 | -- | 23.12 | 24 | -- | -- |
| 159.3 | 0.589 | 9.78 | -- | -- | -- | -- | -- | 0.334 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.07 | temperature | 30 | 10 | < th | dose dependent | sin | 6 | NA |
| 4 | 42.39 | temperature | 10 | 10 | > th | dose dependent | sin | 6 | NA |
| 8 | 42.61 | temperature | 20 | 30 | > th | dose dependent | sin | 7 | NA |
| 17 | 42.82 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 15 |
| 24 | 43.15 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 20 |
| 26 | 43.20 | temperature | 25 | 90 | < th | dose independent | sin | 7 | NA |
| 30 | 43.35 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 13 |
| 32 | 43.37 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 19 |
| 33 | 43.40 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 22 |
| 35 | 43.41 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 36 | 43.43 | temperature | 25 | 90 | > th | dose independent | rect. | 13 | 23 |
| 44 | 43.53 | temperature | 15 | 30 | > th | dose dependent | rect. | 6 | 21 |
| 46 | 43.55 | temperature | 25 | 90 | < th | dose independent | rect. | 11 | 22 |
| 47 | 43.55 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 15 |
| 55 | 43.66 | temperature | 25 | 90 | < th | dose independent | rect. | 9 | 23 |
| 63 | 43.79 | temperature | 25 | 30 | < th | dose independent | rect. | 3 | 23 |
| 67 | 43.82 | temperature | 25 | 90 | < th | dose independent | rect. | 21 | 22 |
| 70 | 43.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 13 |
| 73 | 43.92 | temperature | 25 | 90 | < th | dose independent | rect. | 19 | 23 |
| 74 | 43.93 | temperature | 25 | 90 | > th | dose independent | rect. | 20 | 23 |
| 100 | 44.24 | temperature | 25 | 90 | < th | dose independent | no | NA | NA |
| 101 | 44.24 | temperature | 25 | 90 | > th | dose independent | rect. | 6 | 22 |
| 105 | 44.32 | temperature | 25 | 90 | < th | dose independent | rect. | 13 | 23 |
| 112 | 44.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 17 |
| 118 | 44.42 | temperature | 25 | 90 | > th | dose independent | rect. | 4 | 23 |
| 119 | 44.44 | temperature | 25 | 90 | < th | dose independent | rect. | 15 | 23 |
| 129 | 44.51 | temperature | 25 | 90 | < th | dose independent | rect. | 7 | 23 |
| 135 | 44.54 | temperature | 25 | 90 | < th | dose independent | rect. | 17 | 23 |
| 148 | 44.63 | temperature | 25 | 90 | > th | dose independent | no | NA | NA |
| 162 | 44.71 | temperature | 25 | 90 | > th | dose independent | rect. | 20 | 15 |
| 167 | 44.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 174 | 44.86 | temperature | 25 | 90 | > th | dose independent | rect. | 17 | 23 |
| 193 | 44.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 199 | 44.98 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 200 | 44.99 | temperature | 25 | 90 | > th | dose independent | rect. | 22 | 23 |
| 216 | 45.05 | temperature | 25 | 30 | < th | dose independent | rect. | 1 | 23 |
| 236 | 45.10 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 258 | 45.19 | temperature | 25 | 90 | > th | dose independent | rect. | 22 | 13 |
| 263 | 45.21 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 274 | 45.25 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 288 | 45.30 | temperature | 25 | 90 | > th | dose independent | sin | 7 | NA |
| 294 | 45.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 314 | 45.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 15 |
| 322 | 45.39 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 458 | 45.78 | temperature | 25 | 30 | < th | dose independent | rect. | 5 | 23 |
| 495 | 45.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 19 |
| 526 | 45.94 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 551 | 46.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 11 |
| 574 | 46.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 575 | 46.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 583 | 46.07 | radiation | 1 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 614 | 46.16 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 624 | 46.19 | temperature | 25 | 90 | > th | dose independent | rect. | 17 | 19 |
| 626 | 46.19 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 635 | 46.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 666 | 46.28 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 669 | 46.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 679 | 46.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 770 | 46.43 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 781 | 46.45 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 799 | 46.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 822 | 46.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 843 | 46.58 | temperature | 25 | 30 | < th | dose independent | rect. | 3 | 15 |
| 962 | 46.77 | radiation | 1 | 270 | < th | dose independent | rect. | 21 | 22 |