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Os01g0221600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function UPF0005 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.93 (0.0513) R2 : 0.743
β1 : -- (--) R2dD : -- R2D : --
β2 : 2 (0.142) R2dC : 0.126 R2C : 0.277
β3 : -3.17 (0.117) R2dE : 0.465 R2E : 0.611
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.236 (0.108) R2dN8 : 0.00348 R2N8 : 0.00027
σ : 0.964
deviance : 428.4
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C
peak time of C : 5.85
E
wheather : temperature
threshold : 19.78
memory length : 318
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 14.4
open length of G : 11.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
424.88 0.968 9.92 -0.0831 2.03 -3.02 -1.06 0.397 0.234 6.1 19.74 293 14.5 11.3
424.47 0.96 9.93 -0.11 1.96 -3.12 -1.27 -- 0.225 5.96 19.77 309 14.4 11.2
426.5 0.962 9.92 -0.0759 2.02 -3.01 -- 0.699 0.242 6.19 19.72 304 14.4 11.3
428.14 0.964 9.93 -0.106 1.99 -3.14 -- -- 0.227 5.93 19.8 315 14.4 11.2
499.58 1.04 9.92 0.241 -- -3.47 -- 1.53 0.395 -- 19.46 199 14.4 11.1
563.52 1.11 9.89 -0.704 4.39 -- 0.457 -- 0.039 8.66 -- -- -- --
564.2 1.11 9.89 -0.69 4.39 -- -- -- 0.0388 8.65 -- -- -- --
465.96 1.01 9.94 -0.0578 -- -3.78 -- -- 0.287 -- 19.76 293 12.9 11.9
428.4 0.964 9.93 -- 2 -3.17 -- -- 0.236 5.85 19.78 318 14.4 11.2
1650.81 1.9 10 -0.678 -- -- -- -- 0.0765 -- -- -- -- --
576.74 1.12 9.87 -- 4.39 -- -- -- 0.116 8.66 -- -- -- --
464.54 1 9.95 -- -- -3.78 -- -- 0.341 -- 19.7 303 12.8 11.8
1662.94 1.9 9.99 -- -- -- -- -- 0.152 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 429.60 temperature 20 270 > th dose independent rect. 15 11
5 438.40 temperature 20 10 < th dose independent sin 14 NA
6 438.77 temperature 25 270 < th dose dependent sin 17 NA
7 438.96 temperature 20 270 < th dose independent rect. 11 18
8 438.98 temperature 20 270 < th dose independent sin 16 NA
11 439.53 temperature 20 270 < th dose independent rect. 14 15
13 439.64 temperature 25 270 < th dose dependent rect. 11 16
17 439.98 temperature 20 270 < th dose independent rect. 14 13
24 440.52 temperature 20 10 < th dose independent rect. 15 15
27 440.67 temperature 20 10 < th dose independent rect. 15 18
37 441.11 temperature 20 90 > th dose independent sin 16 NA
41 441.35 temperature 20 10 > th dose independent sin 15 NA
42 441.36 temperature 20 90 < th dose independent rect. 15 18
56 441.97 temperature 20 10 < th dose independent rect. 15 13
79 442.71 temperature 20 90 < th dose independent rect. 12 21
107 443.65 temperature 20 90 < th dose independent rect. 17 12
185 446.52 temperature 20 10 < th dose independent rect. 12 18
186 446.53 temperature 20 10 < th dose independent rect. 12 21
205 447.08 temperature 20 90 > th dose independent rect. 15 23
279 448.91 temperature 20 720 > th dose independent rect. 8 17
366 451.28 temperature 20 10 > th dose independent rect. 15 23
407 452.85 temperature 25 90 < th dose dependent rect. 13 22
412 453.13 temperature 20 10 > th dose independent rect. 16 11
424 453.68 temperature 25 720 < th dose dependent rect. 15 6
435 453.84 temperature 20 90 > th dose independent rect. 7 23
445 454.05 temperature 20 90 > th dose independent no NA NA
460 454.25 temperature 20 90 > th dose independent rect. 21 23
477 454.62 temperature 20 90 < th dose independent rect. 6 23
518 455.30 temperature 25 720 < th dose dependent rect. 17 2
554 455.88 temperature 20 90 < th dose independent no NA NA
570 456.38 temperature 20 90 < th dose independent rect. 17 23
643 457.68 temperature 20 10 < th dose independent rect. 10 23
649 457.79 temperature 20 10 > th dose independent no NA NA
658 457.96 temperature 20 10 < th dose independent rect. 10 20
679 458.24 temperature 20 90 < th dose independent rect. 3 23
682 458.27 temperature 20 10 < th dose independent rect. 7 23
720 458.83 temperature 20 10 < th dose independent rect. 17 23
733 458.95 temperature 20 10 < th dose independent no NA NA
738 459.02 temperature 20 10 < th dose independent rect. 19 23
752 459.26 temperature 20 10 > th dose independent rect. 21 23
764 459.54 temperature 20 90 < th dose independent rect. 21 23
791 459.98 temperature 20 10 < th dose independent rect. 3 23
799 460.20 temperature 20 10 < th dose independent rect. 23 23
807 460.26 temperature 20 10 < th dose independent rect. 1 23
809 460.33 temperature 20 10 < th dose independent rect. 21 23
821 460.41 temperature 20 90 < th dose independent rect. 1 23
835 460.58 temperature 20 10 > th dose independent rect. 6 23
860 460.98 temperature 25 10 < th dose dependent rect. 12 20
884 461.23 temperature 25 10 < th dose dependent rect. 12 22
930 461.70 temperature 25 90 < th dose dependent rect. 7 22