BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0253100 Os06g0253100|AK105317
(146 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0253100 HSP20-like chaperone domain containing protein 239 4e-64
Os03g0267200 Low molecular mass heat shock protein Oshsp17.7 92 1e-19
Os03g0266300 Class I low-molecular-weight heat shock protei... 91 2e-19
Os01g0135800 Similar to Cytosolic class I small heat shock ... 86 1e-17
Os03g0266900 Low molecular mass heat shock protein Oshsp17.3 79 1e-15
Os03g0267000 Low molecular mass heat shock protein Oshsp18.0 79 1e-15
Os01g0136000 Similar to Cytosolic class I small heat-shock ... 74 3e-14
Os01g0136200 16.9 kDa class I heat shock protein 72 2e-13
Os01g0136100 16.9 kDa class I heat shock protein 72 2e-13
Os04g0445100 Similar to 22.7 kDa class IV heat shock protei... 67 5e-12
>Os06g0253100 HSP20-like chaperone domain containing protein
Length = 146
Score = 239 bits (611), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 123/146 (84%), Positives = 123/146 (84%)
Query: 1 MADLFFGGPFRRILYGRPFPPDWASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVE 60
MADLFFGGPFRRILYGRPFPPDWASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVE
Sbjct: 1 MADLFFGGPFRRILYGRPFPPDWASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVE 60
Query: 61 DGNVLTVRGAAPHXXXXXXXXXXXDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNG 120
DGNVLTVRGAAPH DVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNG
Sbjct: 61 DGNVLTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNG 120
Query: 121 VLTVVVPKEXXXXXXXXXXXXVSSKL 146
VLTVVVPKE VSSKL
Sbjct: 121 VLTVVVPKEPAPARPRTRPIAVSSKL 146
>Os03g0267200 Low molecular mass heat shock protein Oshsp17.7
Length = 159
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 63/106 (59%), Gaps = 6/106 (5%)
Query: 24 ASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHXXXXXXXXXX 83
A+A A A +DW ETP HV + +VPGL K++VKV+V+DGN+L + G
Sbjct: 46 AAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDK-- 103
Query: 84 XDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTVVVPKE 129
WH ER +F R LP + EQI+AS++NGVLTV VPKE
Sbjct: 104 ----WHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKE 145
>Os03g0266300 Class I low-molecular-weight heat shock protein 17.9
Length = 161
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 63/106 (59%), Gaps = 6/106 (5%)
Query: 24 ASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHXXXXXXXXXX 83
+A A A +DW ETP +HV + +VPGL K++VKV+V+DGN+L + G
Sbjct: 48 TAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQ-- 105
Query: 84 XDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTVVVPKE 129
WH ER +F R LP + EQI+AS++NGVLTV VPKE
Sbjct: 106 ----WHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKE 147
>Os01g0135800 Similar to Cytosolic class I small heat shock protein 3B (Fragment)
Length = 150
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 32 MDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHXXXXXXXXXXXDVVWHVA 91
+DW ETPT+HV ++PG+ KD KV+VEDG VL + G D WH
Sbjct: 42 VDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISG---ERAREEDVDGKNDERWHHV 98
Query: 92 ERGRPEFAREVALPAEVRVEQIRASVDNGVLTVVVPKE 129
ER +F R LP RV+Q+ AS+DNGVLTV VPKE
Sbjct: 99 ERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKE 136
>Os03g0266900 Low molecular mass heat shock protein Oshsp17.3
Length = 154
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 64/106 (60%), Gaps = 6/106 (5%)
Query: 24 ASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHXXXXXXXXXX 83
A+A A A +DW ETP +HV + +VPGL K++VKV+VEDGNVL + G
Sbjct: 41 AAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDK-- 98
Query: 84 XDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTVVVPKE 129
WH ER +F R LP + EQI+AS++NGVLTV VPKE
Sbjct: 99 ----WHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKE 140
>Os03g0267000 Low molecular mass heat shock protein Oshsp18.0
Length = 161
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 63/106 (59%), Gaps = 6/106 (5%)
Query: 24 ASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHXXXXXXXXXX 83
+A A A +DW ETP +HV + +VPGL K++VKV+VEDGNVL + G
Sbjct: 48 TAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDK-- 105
Query: 84 XDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTVVVPKE 129
WH ER +F R LP + EQI+AS++NGVLTV VPKE
Sbjct: 106 ----WHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKE 147
>Os01g0136000 Similar to Cytosolic class I small heat-shock protein HSP17.5
Length = 149
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 10/124 (8%)
Query: 6 FGGPFRRILYGRPFPPDWASAS-ATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNV 64
F G FR ++ P D +A+ A A +DW ETP SHV + ++PG+ K++VKV+VE+GNV
Sbjct: 20 FDGVFRSLV---PATSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNV 76
Query: 65 LTVRGAAPHXXXXXXXXXXXDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTV 124
L + G WH ER +F R LP +V+Q++AS++NGVLTV
Sbjct: 77 LVISGQRSKEKEDKNDK------WHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTV 130
Query: 125 VVPK 128
VPK
Sbjct: 131 TVPK 134
>Os01g0136200 16.9 kDa class I heat shock protein
Length = 150
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 24 ASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHXXXXXXXXXX 83
+A A A +DW ETP SHV + ++PG+ K++VKV+VE+GNVL + G
Sbjct: 37 TAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDK-- 94
Query: 84 XDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTVVVPK 128
WH ER +F R LP +V+Q++A ++NGVLTV VPK
Sbjct: 95 ----WHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPK 135
>Os01g0136100 16.9 kDa class I heat shock protein
Length = 150
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 24 ASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHXXXXXXXXXX 83
+A A A +DW ETP SHV + ++PG+ K++VKV+VE+GNVL + G
Sbjct: 37 TAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDK-- 94
Query: 84 XDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTVVVPK 128
WH ER +F R LP +V+Q++A ++NGVLTV VPK
Sbjct: 95 ----WHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPK 135
>Os04g0445100 Similar to 22.7 kDa class IV heat shock protein precursor
Length = 215
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 9 PFRRILYGRPFPPDWASAS--ATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLT 66
PFR IL PF D + + A +DW ET +H + ++VPG+ K+D++V+VED VL
Sbjct: 54 PFR-ILEHVPFGFDRDDVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLR 112
Query: 67 VRGAAPHXXXXXXXXXXXDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTVVV 126
+ G WH ER F R++ LP ++ I AS+DNGVLTV
Sbjct: 113 ISGERRREETTEQKGGGDH--WHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTVRF 170
Query: 127 PK 128
K
Sbjct: 171 RK 172
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,556,741
Number of extensions: 167969
Number of successful extensions: 445
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 440
Number of HSP's successfully gapped: 12
Length of query: 146
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 55
Effective length of database: 12,284,327
Effective search space: 675637985
Effective search space used: 675637985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 151 (62.8 bits)