Os03g0267000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Low molecular mass heat shock protein Oshsp18.0.
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Os03g0267000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Low molecular mass heat shock protein Oshsp18.0.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 368.66 | 0.902 | 8.36 | 0.474 | 3.07 | -2.11 | 0.273 | -1.8 | 0.0804 | 8.92 | 81.79 | 10 | -- | -- |
| 377.39 | 0.912 | 8.35 | 0.37 | 3.06 | -2.15 | 0.9 | -- | 0.0569 | 8.97 | 81.79 | 10 | -- | -- |
| 366.79 | 0.899 | 8.36 | 0.491 | 3.05 | -2.12 | -- | -1.89 | 0.0741 | 8.9 | 81.82 | 6 | -- | -- |
| 380.08 | 0.914 | 8.35 | 0.405 | 3.06 | -2.19 | -- | -- | 0.0484 | 8.91 | 81.82 | 6 | -- | -- |
| 850.9 | 1.36 | 8.35 | 0.311 | -- | -2.67 | -- | -1.63 | 0.356 | -- | 63 | 2 | -- | -- |
| 507.91 | 1.06 | 8.27 | 0.118 | 3.47 | -- | 1.78 | -- | 0.435 | 10.7 | -- | -- | -- | -- |
| 520.96 | 1.07 | 8.26 | 0.188 | 3.46 | -- | -- | -- | 0.439 | 10.6 | -- | -- | -- | -- |
| 866.5 | 1.37 | 8.38 | 0.229 | -- | -2.69 | -- | -- | 0.301 | -- | 63 | 2 | -- | -- |
| 384.36 | 0.918 | 8.36 | -- | 3.06 | -2.16 | -- | -- | 0.0101 | 8.93 | 81.82 | 6 | -- | -- |
| 1259.99 | 1.66 | 8.35 | 0.123 | -- | -- | -- | -- | 0.422 | -- | -- | -- | -- | -- |
| 521.89 | 1.07 | 8.27 | -- | 3.46 | -- | -- | -- | 0.418 | 10.6 | -- | -- | -- | -- |
| 865.19 | 1.37 | 8.39 | -- | -- | -2.7 | -- | -- | 0.262 | -- | 63 | 2 | -- | -- |
| 1260.39 | 1.66 | 8.36 | -- | -- | -- | -- | -- | 0.408 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 361.68 | temperature | 10 | 30 | > th | dose dependent | rect. | 6 | 19 |
| 2 | 361.92 | humidity | 80 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 3 | 362.02 | humidity | 80 | 10 | > th | dose dependent | rect. | 24 | 20 |
| 4 | 362.08 | humidity | 80 | 10 | > th | dose dependent | sin | 5 | NA |
| 6 | 362.34 | humidity | 80 | 10 | > th | dose dependent | rect. | 24 | 18 |
| 12 | 363.53 | humidity | 80 | 10 | > th | dose dependent | rect. | 24 | 16 |
| 25 | 367.08 | humidity | 80 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 29 | 368.31 | temperature | 25 | 10 | > th | dose dependent | sin | 8 | NA |
| 32 | 369.00 | humidity | 80 | 10 | > th | dose dependent | rect. | 22 | 22 |
| 37 | 369.86 | humidity | 80 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 40 | 370.07 | humidity | 80 | 10 | > th | dose dependent | no | NA | NA |
| 42 | 370.08 | humidity | 80 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 44 | 370.24 | humidity | 80 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 47 | 370.36 | radiation | 10 | 30 | < th | dose dependent | sin | 4 | NA |
| 48 | 370.46 | humidity | 80 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 49 | 370.49 | humidity | 80 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 62 | 371.79 | humidity | 90 | 30 | < th | dose independent | sin | 3 | NA |
| 65 | 371.85 | humidity | 80 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 126 | 377.52 | humidity | 60 | 10 | > th | dose dependent | rect. | 11 | 19 |
| 171 | 380.32 | radiation | 1 | 90 | < th | dose independent | sin | 3 | NA |
| 173 | 380.46 | radiation | 1 | 90 | > th | dose independent | sin | 4 | NA |
| 210 | 382.15 | temperature | 25 | 30 | > th | dose independent | sin | 5 | NA |
| 218 | 382.46 | radiation | 20 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 259 | 384.62 | humidity | 90 | 30 | > th | dose independent | sin | 4 | NA |
| 261 | 384.72 | humidity | 90 | 30 | > th | dose independent | rect. | 24 | 18 |
| 297 | 386.04 | radiation | 10 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 300 | 386.14 | temperature | 25 | 30 | < th | dose independent | sin | 5 | NA |
| 324 | 386.62 | humidity | 90 | 30 | > th | dose independent | rect. | 24 | 14 |
| 348 | 387.26 | humidity | 80 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 372 | 387.95 | radiation | 10 | 90 | < th | dose dependent | rect. | 1 | 14 |
| 407 | 389.20 | temperature | 25 | 10 | > th | dose independent | rect. | 6 | 5 |
| 433 | 390.10 | temperature | 25 | 30 | < th | dose independent | rect. | 24 | 20 |
| 441 | 390.33 | temperature | 25 | 30 | < th | dose independent | rect. | 24 | 18 |
| 542 | 393.16 | humidity | 90 | 30 | > th | dose independent | rect. | 24 | 10 |
| 557 | 393.54 | temperature | 25 | 30 | < th | dose independent | rect. | 24 | 14 |
| 603 | 394.86 | humidity | 50 | 10 | > th | dose dependent | rect. | 14 | 16 |
| 616 | 395.02 | humidity | 90 | 10 | < th | dose dependent | sin | 8 | NA |
| 633 | 395.35 | humidity | 90 | 10 | < th | dose independent | rect. | 6 | 10 |
| 669 | 395.98 | humidity | 90 | 10 | < th | dose independent | rect. | 6 | 22 |
| 718 | 396.95 | humidity | 90 | 10 | < th | dose independent | rect. | 6 | 20 |
| 722 | 396.99 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 6 |
| 763 | 397.76 | temperature | 25 | 270 | > th | dose dependent | rect. | 4 | 4 |
| 764 | 397.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 16 |
| 775 | 398.08 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 3 |
| 810 | 398.57 | radiation | 1 | 30 | > th | dose dependent | sin | 10 | NA |
| 819 | 398.79 | radiation | 10 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 826 | 398.90 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 843 | 399.16 | radiation | 30 | 30 | < th | dose dependent | rect. | 11 | 19 |
| 849 | 399.27 | radiation | 1 | 90 | < th | dose independent | rect. | 1 | 16 |
| 855 | 399.40 | radiation | 30 | 30 | < th | dose dependent | rect. | 9 | 21 |
| 884 | 399.85 | radiation | 10 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 886 | 399.88 | radiation | 10 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 888 | 399.91 | radiation | 10 | 30 | < th | dose dependent | no | NA | NA |
| 903 | 400.08 | radiation | 10 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 915 | 400.25 | radiation | 10 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 940 | 400.76 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 9 |
| 955 | 400.98 | humidity | 90 | 30 | < th | dose independent | rect. | 17 | 23 |
| 973 | 401.09 | radiation | 1 | 90 | > th | dose independent | rect. | 17 | 23 |
| 987 | 401.31 | humidity | 90 | 30 | < th | dose independent | rect. | 21 | 14 |
| 998 | 401.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 8 |