Os03g0267200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Low molecular mass heat shock protein Oshsp17.7.
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Os03g0267200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Low molecular mass heat shock protein Oshsp17.7.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.86 | 0.47 | 10.9 | 0.304 | 0.433 | -2.6 | -1.83 | 0.158 | 0.0706 | 19.6 | 29.51 | 12 | -- | -- |
| 99.88 | 0.465 | 10.9 | 0.335 | 0.437 | -2.6 | -1.81 | -- | 0.0785 | 19.5 | 29.46 | 12 | -- | -- |
| 106.93 | 0.482 | 10.9 | 0.381 | 0.511 | -2.43 | -- | -0.025 | 0.0847 | 18 | 28.7 | 12 | -- | -- |
| 106.74 | 0.481 | 10.9 | 0.44 | 0.522 | -2.35 | -- | -- | 0.112 | 17.8 | 28.7 | 12 | -- | -- |
| 117.28 | 0.504 | 10.9 | 0.319 | -- | -2.67 | -- | 0.0746 | 0.0429 | -- | 29.25 | 49 | -- | -- |
| 182.99 | 0.634 | 10.8 | 1 | 1.15 | -- | 0.553 | -- | 0.601 | 15.5 | -- | -- | -- | -- |
| 183.81 | 0.635 | 10.8 | 1.01 | 1.16 | -- | -- | -- | 0.604 | 15.6 | -- | -- | -- | -- |
| 117.23 | 0.504 | 10.9 | 0.344 | -- | -2.66 | -- | -- | 0.0518 | -- | 29.19 | 50 | -- | -- |
| 111.29 | 0.491 | 10.9 | -- | 0.474 | -2.51 | -- | -- | 0.0405 | 17.7 | 28.43 | 40 | -- | -- |
| 258.39 | 0.751 | 10.8 | 0.962 | -- | -- | -- | -- | 0.573 | -- | -- | -- | -- | -- |
| 210.72 | 0.679 | 10.8 | -- | 1.14 | -- | -- | -- | 0.492 | 15.6 | -- | -- | -- | -- |
| 120.14 | 0.51 | 10.9 | -- | -- | -2.76 | -- | -- | -0.00676 | -- | 29.06 | 50 | -- | -- |
| 282.81 | 0.785 | 10.8 | -- | -- | -- | -- | -- | 0.467 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 98.93 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 2 | 99.16 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 3 | 99.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 4 | 99.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 7 | 100.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 8 | 100.15 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 10 | 100.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 15 | 101.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 16 | 101.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 18 | 101.89 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 22 | 102.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 26 | 102.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 35 | 103.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 56 | 105.52 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 146 | 109.34 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 148 | 109.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 163 | 109.86 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 11 |
| 241 | 111.66 | temperature | 25 | 1440 | < th | dose independent | sin | 20 | NA |
| 258 | 111.89 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 15 |
| 259 | 111.90 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 270 | 112.14 | temperature | 25 | 1440 | > th | dose independent | sin | 20 | NA |
| 295 | 112.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 20 |
| 317 | 112.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 328 | 112.85 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 343 | 113.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 345 | 113.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 378 | 113.40 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 384 | 113.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 389 | 113.50 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 420 | 113.77 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 431 | 113.86 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 453 | 113.99 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 461 | 114.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 484 | 114.25 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 511 | 114.49 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 551 | 114.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 555 | 114.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 691 | 115.52 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 764 | 115.81 | temperature | 30 | 30 | < th | dose dependent | sin | 5 | NA |
| 847 | 116.21 | temperature | 30 | 1440 | < th | dose dependent | sin | 21 | NA |
| 852 | 116.22 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 873 | 116.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 901 | 116.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 914 | 116.43 | radiation | 1 | 720 | < th | dose dependent | sin | 23 | NA |
| 916 | 116.43 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 939 | 116.56 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 953 | 116.64 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 960 | 116.66 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 23 |