BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0571100 Os05g0571100|AK068658
(509 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0571100 Protein of unknown function DUF860, plant fami... 675 0.0
Os04g0312100 Protein of unknown function DUF860, plant fami... 146 3e-35
Os11g0544300 Protein of unknown function DUF860, plant fami... 142 5e-34
Os03g0181400 Protein of unknown function DUF860, plant fami... 132 7e-31
Os01g0293200 Protein of unknown function DUF860, plant fami... 132 8e-31
Os09g0473400 Protein of unknown function DUF860, plant fami... 105 1e-22
Os03g0646200 Protein of unknown function DUF860, plant fami... 95 1e-19
Os10g0510300 Protein of unknown function DUF860, plant fami... 91 2e-18
Os01g0617600 Protein of unknown function DUF860, plant fami... 88 1e-17
Os06g0265900 Protein of unknown function DUF860, plant fami... 87 3e-17
Os12g0130100 Similar to Tyrosine-specific protein phosphata... 85 1e-16
Os03g0667400 Similar to Iron regulated metal transporter 80 4e-15
Os03g0786600 Protein of unknown function DUF860, plant fami... 68 2e-11
>Os05g0571100 Protein of unknown function DUF860, plant family protein
Length = 509
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/485 (72%), Positives = 353/485 (72%)
Query: 25 KSLFLGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEIPFDNVIQRDXXXXXXXX 84
KSLFLGAS KEIPFDNVIQRD
Sbjct: 25 KSLFLGASLPLLHPPPPLRLLRPGAPRRLAVVAQAAVKRRKEIPFDNVIQRDKKLKLVLK 84
Query: 85 XRNILVSNPDRVMSXXXXXXXXXXXXXTRKRRLIALLKRFPXXXXXXXXXXYSLRFRLTP 144
RNILVSNPDRVMS TRKRRLIALLKRFP YSLRFRLTP
Sbjct: 85 LRNILVSNPDRVMSLRDLGRFRRDLGLTRKRRLIALLKRFPGVFEVVEEGVYSLRFRLTP 144
Query: 145 AAERLYLDELHLKNESEGLAVTKLRKLLMMSQDKRILIEKIAHLKNDLGLPPEFRDTICL 204
AAERLYLDELHLKNESEGLAVTKLRKLLMMSQDKRILIEKIAHLKNDLGLPPEFRDTICL
Sbjct: 145 AAERLYLDELHLKNESEGLAVTKLRKLLMMSQDKRILIEKIAHLKNDLGLPPEFRDTICL 204
Query: 205 RYPQYFRVVQMDRGPGLELTHWDPXXXXXXXXXXXXXXXXXXXXXXXXIIDRPLKFNRVK 264
RYPQYFRVVQMDRGPGLELTHWDP IIDRPLKFNRVK
Sbjct: 205 RYPQYFRVVQMDRGPGLELTHWDPELAVSAAEVAEEENRAREEQERNLIIDRPLKFNRVK 264
Query: 265 LPQGLKLSRGEARRVAQFKEMPYISPYSDFSHLRSGSAEKEKHACGVVHEILSLTLEKRT 324
LPQGLKLSRGEARRVAQFKEMPYISPYSDFSHLRSGSAEKEKHACGVVHEILSLTLEKRT
Sbjct: 265 LPQGLKLSRGEARRVAQFKEMPYISPYSDFSHLRSGSAEKEKHACGVVHEILSLTLEKRT 324
Query: 325 LVDHLTHFREEFRFSQSLRGMLIRHPDMFYVSLKGDRDSVFLREAYKNSQXXXXXXXXXX 384
LVDHLTHFREEFRFSQSLRGMLIRHPDMFYVSLKGDRDSVFLREAYKNSQ
Sbjct: 325 LVDHLTHFREEFRFSQSLRGMLIRHPDMFYVSLKGDRDSVFLREAYKNSQLVEKSKLVLL 384
Query: 385 XXXMRALVAVPRFPRRGVPATSEEADRTNGAAQMXXXXXXXXXXXXXXXXXMEDLISEIS 444
MRALVAVPRFPRRGVPATSEEADRTNGAAQM MEDLISEIS
Sbjct: 385 KEKMRALVAVPRFPRRGVPATSEEADRTNGAAQMLSEGSDVEDDEDEGLSDMEDLISEIS 444
Query: 445 GGKSDTDYHWGDGWVGENXXXXXXXXXXXXXXLKEVKVTMKKTANSANGKAHVPVFPDGR 504
GGKSDTDYHWGDGWVGEN LKEVKVTMKKTANSANGKAHVPVFPDGR
Sbjct: 445 GGKSDTDYHWGDGWVGENDDSPPDFEDDDGSSLKEVKVTMKKTANSANGKAHVPVFPDGR 504
Query: 505 PRERW 509
PRERW
Sbjct: 505 PRERW 509
>Os04g0312100 Protein of unknown function DUF860, plant family protein
Length = 502
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 119/210 (56%), Gaps = 12/210 (5%)
Query: 165 VTKLRKLLMMSQDKRILIEKIAHLKNDLGLPPEFRDTICLRYPQYFRVVQMDRGPGLELT 224
K+ +LL+++ + +L+ KIAHL DLGL +FR T+C ++P F V G L+L
Sbjct: 183 AAKMHRLLLLAPGRSLLVSKIAHLAPDLGLAMDFRATLCPQHPDLFTFVNTSHGHALQLV 242
Query: 225 HWDPXXXXXXXXXXXXXXXXXXXXXXXXIIDRPLKFNRVKLPQGLKLSRGEARRVAQFKE 284
+IDRP +F +KL +GL L R + +F
Sbjct: 243 -------DPPPPPPPPLPPFRPAAPSDRLIDRPRRFPHLKLRRGLNLRRAHRDYLLRFHS 295
Query: 285 MPYISPYSDFSHLRSGSAEK--EKHACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQSL 342
+P +SP F L G++ + E+ AC VV E+L++T+EKRTLVDHLTHFR +F L
Sbjct: 296 LPEVSP---FEPLDEGASLEMMERRACAVVREVLAMTVEKRTLVDHLTHFRRDFGLPNRL 352
Query: 343 RGMLIRHPDMFYVSLKGDRDSVFLREAYKN 372
R ML+RHP++FYVS+KG R SVFL EA+ +
Sbjct: 353 RAMLVRHPELFYVSVKGLRHSVFLVEAFDD 382
>Os11g0544300 Protein of unknown function DUF860, plant family protein
Length = 467
Score = 142 bits (359), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 129/248 (52%), Gaps = 20/248 (8%)
Query: 142 LTPAAERLYLDELHLKNESEGLAVTKLRKLLMMSQDKRILIEKIAHLKNDLGLPPEFRDT 201
L+P AE L +E L + A + +LLM+S D+R+ I+KIAH + D+GLP +F+
Sbjct: 138 LSPQAEALVEEEARLLEDHSRTAAEYVTRLLMISVDRRLAIDKIAHFRRDMGLPHDFKTR 197
Query: 202 ICLRYPQYFRVVQMDRGPGLELTHWDPXXXXXXXXXXXXXXXXXXXXXXXXI------ID 255
+P+ FRVV+++ G LEL W+P +
Sbjct: 198 WVHMFPEQFRVVRLEDGDYLELVSWNPNWAVTELEKKTAALTGDANANDIASPPGELSLS 257
Query: 256 RPLKFN---------RVKLPQGLKLSRGEARRVAQFKEMPYISPYSDFSHLRSGSAEKEK 306
P+KF R K+ +K E QF++ Y+SPY++ L GS E +K
Sbjct: 258 FPMKFPPNFTSYYKFRGKVHHYVKKGNTE-----QFQKTTYLSPYAEPGGLTPGSPEFDK 312
Query: 307 HACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQSLRGMLIRHPDMFYVSLKGDRDSVFL 366
A V+HEIL+ TLEKR + DHLTHFR EF Q L +L++H +FYVS +G R SVFL
Sbjct: 313 RAVAVMHEILNFTLEKRLVTDHLTHFRREFVMPQKLMRLLLKHYGIFYVSERGKRFSVFL 372
Query: 367 REAYKNSQ 374
E+Y ++
Sbjct: 373 TESYDGTE 380
>Os03g0181400 Protein of unknown function DUF860, plant family protein
Length = 421
Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 125/243 (51%), Gaps = 10/243 (4%)
Query: 142 LTPAAERLYLDELHLKNESEGLAVTKLRKLLMMSQDKRILIEKIAHLKNDLGLPPEFRDT 201
L+P AE L +E L + A + +LLMMS D+R+ I+KIAH + D+GLP +F+
Sbjct: 92 LSPQAEALIEEEARLLEDHSRTAAEYVTRLLMMSVDRRLAIDKIAHFRRDMGLPHDFKTR 151
Query: 202 ICLRYPQYFRVVQMDRGPGLELTHWDPXXXXXXXXXXXXXXXXXXXXXX------XXIID 255
+P+ FRVV+++ G LEL W+P +
Sbjct: 152 WVHMFPEQFRVVRLEDGDYLELVSWNPNWAVTELEKKTAALTGDANANGIGSPPGELSLS 211
Query: 256 RPLKF--NRVKLPQGLKLSRGEARR--VAQFKEMPYISPYSDFSHLRSGSAEKEKHACGV 311
P+KF N + ++ QF++ Y+ PYS+ L GS E +K A V
Sbjct: 212 FPMKFPPNFTSYYKFYGKVHHYVKKGNTEQFQKTTYLYPYSEARGLTPGSPEFDKRAVAV 271
Query: 312 VHEILSLTLEKRTLVDHLTHFREEFRFSQSLRGMLIRHPDMFYVSLKGDRDSVFLREAYK 371
+HE+L+ TLEKR ++DHLT+F EF Q L +L++H +FYV +G R SVFL ++Y
Sbjct: 272 MHEVLNFTLEKRLVIDHLTYFCREFVMPQKLMRLLLKHYGIFYVYERGKRFSVFLTKSYD 331
Query: 372 NSQ 374
++
Sbjct: 332 GTK 334
>Os01g0293200 Protein of unknown function DUF860, plant family protein
Length = 517
Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 109/214 (50%), Gaps = 14/214 (6%)
Query: 163 LAVTKLRKLLMMSQDKRILIEKIAHLKNDLGLPPEFRDTICLRYPQYFRVVQMDRGPG-- 220
L ++L KLLM+S + + + KIA K D GLP +F ++ RYP FR+V D GP
Sbjct: 128 LLASRLAKLLMISSTRALPVPKIAAAKRDFGLPDDFLTSLVPRYPHLFRLVG-DPGPDAS 186
Query: 221 ----LELTHWDPXXXXXXXXXXXXXXXXXXXXXXXXIIDRPLKFNRVKLPQGLKLSRGEA 276
LEL WD + RP VKLP+G L +
Sbjct: 187 GNAFLELVSWD-------DQLAKSVIELRADKEADVVGIRPRPNFTVKLPRGFYLKKEMR 239
Query: 277 RRVAQFKEMPYISPYSDFSHLRSGSAEKEKHACGVVHEILSLTLEKRTLVDHLTHFREEF 336
V + E+PY+SPY+D S L S E EK GV+HE+LSL++E+R V + F +EF
Sbjct: 240 EWVRDWLELPYVSPYADTSGLHPASPEAEKRLIGVLHEVLSLSVERRMAVPIIGKFCDEF 299
Query: 337 RFSQSLRGMLIRHPDMFYVSLKGDRDSVFLREAY 370
R S + RHP +FYVSLKG + LREAY
Sbjct: 300 RLSNAFANAFTRHPGIFYVSLKGGIKTAVLREAY 333
>Os09g0473400 Protein of unknown function DUF860, plant family protein
Length = 399
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 112/230 (48%), Gaps = 11/230 (4%)
Query: 142 LTPAAERLYLDELHLKNESEGLAVTKLRKLLMMSQDKRILIEKIAHLKNDLGLPPEFRDT 201
LTP L +E L ++ V +RKLLM++ +RI + K+ H + LGLP +FRD
Sbjct: 142 LTPLMCSLLEEERRLHDQLLPTRVRAVRKLLMLADHRRIPLAKLHHCRAVLGLPDDFRDR 201
Query: 202 ICLRYPQYFRV-VQMDRGPGLELTHWDPXXXXXXXXXXXXXXXXXXXXXXXXIIDRPLKF 260
+ +P FRV V D LEL WDP + R +F
Sbjct: 202 V-REFPGDFRVAVDPDGRDVLELARWDPALAVSALERDFVVDERR--------VRRTFRF 252
Query: 261 NRVKLPQGLKLSRGEARRVAQFKEMPYISPYSDFSHLRSGSAEKEKHACGVVHEILSLTL 320
V + + L +A R+ P +SPY+ + LR + E EK+ GVVHE LSLTL
Sbjct: 253 A-VPHSRSMPLDAEDADRLDAATTFPLVSPYTSGALLRPWTPEAEKYRVGVVHEFLSLTL 311
Query: 321 EKRTLVDHLTHFREEFRFSQSLRGMLIRHPDMFYVSLKGDRDSVFLREAY 370
EKR L+ H+ F+EE ++ + L + FY++ +VFLR+AY
Sbjct: 312 EKRALIHHIFEFKEELGLTRHMHASLRKQSRAFYLAGTEMNWAVFLRDAY 361
>Os03g0646200 Protein of unknown function DUF860, plant family protein
Length = 446
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 10/229 (4%)
Query: 143 TPAAERLYLDELHLKNESEGLAVTKLRKLLMMSQDKRILIEKIAHLKNDLGLPPEFRDTI 202
TP ++ E + + + A +L +LLM++ + + + +A L+ DLGL P+F ++
Sbjct: 107 TPRLAGIHSAEAQVLDSTRADAADRLLRLLMLAPARALPLHLVARLRLDLGLAPDFPRSL 166
Query: 203 CLRYPQYFRVVQMDRGPGLELTHWDPXXXXXXXXXXXXXXXXXXXXXXXXIIDRPLKFNR 262
YP YF + + G LEL + + PL F
Sbjct: 167 LPNYPDYFALSR--DGALLELVCY---RKDLAVSAMQSYAQRTGGYKVGDAVPFPLSF-- 219
Query: 263 VKLPQGLKLSRGEARRVAQFKEMPYISPYSDFSHLRSGSAEKEKHACGVVHEILSLTLEK 322
P+G +L + + + ++ +PYISPY D SHL S EK V+HE+LSLT+ K
Sbjct: 220 ---PRGFELDKKVRKWLDDWQRLPYISPYEDGSHLTPRSDITEKRTAAVLHEVLSLTVGK 276
Query: 323 RTLVDHLTHFREEFRFSQSLRGMLIRHPDMFYVSLKGDRDSVFLREAYK 371
+ + L E R R +L RHP +FY+S K +V LRE+++
Sbjct: 277 KMEKEVLVKLGEALRLPPGFRKVLARHPGIFYLSHKLRTQTVVLRESFR 325
>Os10g0510300 Protein of unknown function DUF860, plant family protein
Length = 375
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 26/208 (12%)
Query: 174 MSQDKRILIEKIAHLKNDLGLPPEFRDTICLRYPQYFRVVQMDRGPGLELTHW--DPXXX 231
MS + + + + + +L LP +F ++ +P F + P + H DP
Sbjct: 125 MSASRSLPLRAVFRVWRELALPDDFEVSVVADHPNLFHLAPNPAEPNTHILHLVADPATE 184
Query: 232 XXXXXXXXXXXXXXXXXXXXXIIDRPLKFN-RVKLPQGLKLSRGEARRVAQFKEMPYISP 290
RP K +++ P G +L++ ++V +++++PYISP
Sbjct: 185 EFTPAVDKT---------------RPEKHAFKLQFPPGFRLTKEYRKKVKEWQQLPYISP 229
Query: 291 YSDFSHLRSGSA--------EKEKHACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQSL 342
Y GS + EK A G+ HE LSLT+EK V+ + FR+ F ++
Sbjct: 230 YEVSIQKGVGSKRVSKMARKKMEKRAVGIAHEFLSLTVEKMVEVEKFSQFRKWFGIEVNV 289
Query: 343 RGMLIRHPDMFYVSLKGDRDSVFLREAY 370
R + + HP +FY+S KG R +VFLREAY
Sbjct: 290 RDVFLDHPGIFYLSAKGKRHTVFLREAY 317
>Os01g0617600 Protein of unknown function DUF860, plant family protein
Length = 466
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 116/245 (47%), Gaps = 9/245 (3%)
Query: 138 LRFRLTPAAERLYLDELHLKNESEGLAVTKLRKLLMMSQ-DKRILIEKIAHLKNDLGLPP 196
L RLTP A E S ++ ++RKLL+++ R+ +E I L+ DLGLP
Sbjct: 135 LHARLTPRAAAALRLEADAVASSLPASIVRIRKLLLLAPPHHRLRLEHIRLLRRDLGLPD 194
Query: 197 EFRDTICLRYPQYFRVVQMDRGPGLELTHWDPXXXXXXXXXXXXXXXXXXXXXXXXIIDR 256
+F ++I +P FR+ + P D
Sbjct: 195 DFAESIIQAHPALFRLTPDQFVEFVPSPSDPPGLSVAAVERAREQHYREHRNPGAGEEDV 254
Query: 257 PLKFNRVKLPQGLKLSRGEARRVAQFKEMPYISPYSDFS--HLRSGSAEK--EKHACGVV 312
F + P G K+ + V +++ +PY SPY+D S LRS A + EK A V
Sbjct: 255 RFAFP-TRFPPGFKIGKYFRIAVWKWQRLPYASPYADVSGHDLRSLEARRRMEKRAVAAV 313
Query: 313 HEILSLTLEKRTLVDHLTHFREEFRFSQSLRGMLIRHPDMFYVSLKGDRD---SVFLREA 369
HE+LSLT+EKRT ++ L FR+ + ++ L+++ +FY+S +G++ +VFLREA
Sbjct: 314 HELLSLTVEKRTTLERLALFRDALGVPKKIKEFLLKYQGIFYISTRGNQGKLHTVFLREA 373
Query: 370 YKNSQ 374
Y +
Sbjct: 374 YYKGE 378
>Os06g0265900 Protein of unknown function DUF860, plant family protein
Length = 393
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 95/212 (44%), Gaps = 18/212 (8%)
Query: 167 KLRKLLMMSQDKRILIEKIAHLKNDLGLPPEFRDTICLRYPQYFRVV----QMDRGPGLE 222
+L ++LM+++ +R+ + K+A L+ LGLP ++ + FR+ LE
Sbjct: 115 RLARVLMLARGRRLQVSKLAALRGPLGLPDDYLLRLLPARTDLFRLANPYPHRRNAAELE 174
Query: 223 LTHWDPXXXXXXXXXXXXXXXXXXXXXXXXIIDRPLKFNRVKLPQGLKLSRGEARRVAQF 282
L W P +F LP S ++ +F
Sbjct: 175 LLRWVPSLAVSSVEAAAASAADSSAP----------RFT-CSLPPSWAKSHA---KMEEF 220
Query: 283 KEMPYISPYSDFSHLRSGSAEKEKHACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQSL 342
PYISPYS+ A+ EK A VVHE+LSLTL K+ V L HFR EF +
Sbjct: 221 NSTPYISPYSERWAAIGTDADAEKRAVAVVHELLSLTLWKKMSVLKLEHFRREFGLPEDT 280
Query: 343 RGMLIRHPDMFYVSLKGDRDSVFLREAYKNSQ 374
ML RHP +FYVS + +V LRE Y+ S+
Sbjct: 281 ARMLHRHPCLFYVSNRYKIHTVVLREGYEGSE 312
>Os12g0130100 Similar to Tyrosine-specific protein phosphatase-like protein
Length = 216
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Query: 263 VKLPQGLKLSRGEARRVAQFKEMPYISPYSDFS-HLRSGSAEKEKHACGVVHEILSLTLE 321
+ P G K+ +G ++ ++ +PY Y + H + EKH G++HE+LSLT+E
Sbjct: 58 INFPTGFKIEKGFREKLGNWQRLPYTKAYENNELHPIHNVEQLEKHIVGILHELLSLTVE 117
Query: 322 KRTLVDHLTHFREEFRFSQSLRGMLIRHPDMFYVSLKGDRDSVFLREAY 370
K ++ +HFR F +LR ++++HP +FY+S KG +V LRE+Y
Sbjct: 118 KMIPLERFSHFRRPFDMEVNLRELILKHPGIFYISTKGSTQTVLLRESY 166
>Os03g0667400 Similar to Iron regulated metal transporter
Length = 175
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Query: 257 PLKFNRVKLPQGLKLSRGEARRVAQFKEMPYISPYSDFSHLRSGSAEKEKHACGVVHEIL 316
P F R+K P G + +R V +++++ + SPY + + + + K A V+HEIL
Sbjct: 28 PFAF-RLKYPAGFRPNRNYLEEVVRWQKLAFPSPYLNARRVEPATPQARKRAVAVLHEIL 86
Query: 317 SLTLEKRTLVDHLTHFREEFRFSQSLRGMLIRHPDMFYVSLKGDRDSVFLREAYKNSQ 374
SLT+ +R D L F E+R L LI++ +FY++ KG R +VFL+EAY +S
Sbjct: 87 SLTMNRRLTSDKLEIFHNEYRLPCKLLLCLIKNHGIFYITNKGARSTVFLKEAYDDSN 144
>Os03g0786600 Protein of unknown function DUF860, plant family protein
Length = 405
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 112/265 (42%), Gaps = 14/265 (5%)
Query: 115 RRLIALLKRFPXXXXXXXXXXYSLR-FRLTPAAERLYLDELHLKNESEGLAVTKLRKLLM 173
RR+I+ L+RFP ++ FRL+ +A L +E + ++L +LL+
Sbjct: 83 RRVISFLRRFPAAFVESVGPEHNHPWFRLSGSAAGLLQEEREVFAARRADITSRLGRLLL 142
Query: 174 MSQDKRILIEKIAHLKNDLGLPPE-FRDTICLRY---PQYFRVVQMDRGPGLELTHWDPX 229
M+ +R+ + + LGLP + FR C Y FR++ + G + +
Sbjct: 143 MAPRRRLPLRAAQGMLWHLGLPEDYFR---CRDYDIAQDGFRILTI--GDSVCREEEEDD 197
Query: 230 XXXXXXXXXXXXXXXXXXXXXXXIIDRPLKFNRVKLP----QGLKLSRGEARRVAQFKEM 285
I R V +P +GL+L + + F+++
Sbjct: 198 GRELVLIDNGEHQEMPKSVLQMDAIRRFGSMETVPIPLFQSKGLRLKQKIEAWLEGFQKL 257
Query: 286 PYISPYSDFSHLRSGSAEKEKHACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQSLRGM 345
PY+SPY DFS + S EK GV+HE+LSL + L R+ Q +
Sbjct: 258 PYVSPYEDFSGIYRDSDVSEKRVVGVLHELLSLFVTCSAERRRLLCLRQHLGLPQKFHRV 317
Query: 346 LIRHPDMFYVSLKGDRDSVFLREAY 370
RHP +FY+ LK V L+EAY
Sbjct: 318 FERHPHVFYLLLKEKTCFVVLKEAY 342
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,820,845
Number of extensions: 366198
Number of successful extensions: 634
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 621
Number of HSP's successfully gapped: 15
Length of query: 509
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 404
Effective length of database: 11,553,331
Effective search space: 4667545724
Effective search space used: 4667545724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)