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Os03g0646200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF860, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.38 (0.044) R2 : 0.687
β1 : 0.957 (0.161) R2dD : 0.0253 R2D : 0.0233
β2 : 2.08 (0.123) R2dC : 0.239 R2C : 0.434
β3 : -2.24 (0.139) R2dE : 0.221 R2E : 0.419
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.16 (0.0941) R2dN8 : 0.00247 R2N8 : 0.00735
σ : 0.824
deviance : 312.67
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_____
C
peak time of C : 15.7
E
wheather : radiation
threshold : 25.34
memory length : 243
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.58
open length of G : 7.85

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
301.07 0.815 7.38 0.896 2.11 -2.34 1.2 -1.68 -0.178 15.3 28.39 268 2.3 8.72
304.79 0.813 7.4 0.885 2.11 -2.23 1.8 -- -0.174 15.8 25.22 248 2.6 7.68
304.56 0.813 7.38 0.947 2.05 -2.37 -- -1.89 -0.17 15.4 27.74 243 2.6 8.2
312.67 0.824 7.38 0.957 2.08 -2.24 -- -- -0.16 15.7 25.34 243 2.58 7.85
427.47 0.963 7.35 1.05 -- -2.89 -- -1.21 -0.0815 -- 38.7 134 2.35 7.82
370.52 0.902 7.44 0.979 3.34 -- 2.3 -- -0.203 17.3 -- -- -- --
383.66 0.917 7.43 0.975 3.35 -- -- -- -0.192 17.3 -- -- -- --
433.42 0.97 7.35 1.01 -- -2.89 -- -- -0.123 -- 38.84 134 2.3 7.87
336.72 0.855 7.4 -- 2.1 -2.21 -- -- -0.243 15.8 25.28 236 2.68 8.1
969.86 1.46 7.39 0.86 -- -- -- -- -0.275 -- -- -- -- --
408.72 0.946 7.46 -- 3.34 -- -- -- -0.301 17.3 -- -- -- --
460.3 0.999 7.38 -- -- -2.85 -- -- -0.212 -- 39.98 132 2.31 7.88
989.37 1.47 7.41 -- -- -- -- -- -0.371 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 302.31 radiation 30.0 270 < th dose dependent rect. 2 9
2 302.69 radiation 20.0 270 < th dose dependent rect. 3 6
5 303.87 radiation 30.0 270 < th dose dependent rect. 2 11
6 303.92 radiation 10.0 270 < th dose independent rect. 3 5
14 304.91 radiation 20.0 270 < th dose independent rect. 2 7
21 305.45 radiation 40.0 270 < th dose dependent rect. 2 15
53 307.31 wind 5.0 270 < th dose independent rect. 3 3
74 308.87 wind 9.0 270 < th dose independent rect. 6 21
83 309.79 precipitation 0.1 270 < th dose independent rect. 6 21
84 309.79 precipitation 0.1 270 < th dose dependent rect. 6 21
91 309.94 radiation 40.0 90 < th dose dependent rect. 5 14
92 310.00 radiation 40.0 10 < th dose independent rect. 5 17
97 310.51 radiation 30.0 90 < th dose independent rect. 4 18
98 310.52 wind 5.0 270 < th dose independent rect. 2 5
102 310.72 radiation 40.0 10 < th dose dependent rect. 5 17
103 310.79 radiation 40.0 90 < th dose dependent rect. 4 18
104 310.84 precipitation 0.1 270 < th dose independent rect. 3 3
105 310.84 precipitation 0.1 270 < th dose dependent rect. 3 3
107 310.91 atmosphere 1010.0 270 < th dose independent rect. 3 3
112 311.05 radiation 40.0 90 < th dose dependent rect. 13 22
129 311.56 temperature 10.0 270 > th dose independent rect. 3 3
131 311.56 temperature 30.0 270 < th dose independent rect. 3 3
132 311.56 humidity 50.0 270 > th dose independent rect. 3 3
135 311.56 atmosphere 995.0 270 > th dose independent rect. 3 3
140 311.56 temperature 10.0 270 > th dose independent rect. 6 21
141 311.62 radiation 20.0 270 < th dose independent rect. 2 17
145 311.70 radiation 1.0 90 > th dose dependent rect. 8 10
163 311.90 radiation 40.0 270 < th dose independent rect. 2 15
167 311.96 radiation 40.0 270 < th dose dependent sin 6 NA
168 311.99 radiation 20.0 90 < th dose independent rect. 3 20
185 312.47 wind 1.0 270 > th dose independent rect. 2 5
201 312.73 radiation 20.0 90 < th dose independent rect. 15 18
202 312.80 wind 1.0 270 > th dose independent rect. 3 3
209 312.93 radiation 40.0 270 < th dose independent rect. 2 17
214 313.02 humidity 70.0 90 > th dose independent rect. 3 8
216 313.05 radiation 40.0 90 < th dose dependent rect. 15 18
220 313.14 radiation 40.0 90 < th dose dependent rect. 13 20
229 313.23 radiation 40.0 10 < th dose independent rect. 5 15
245 313.62 radiation 40.0 270 < th dose independent rect. 10 22
248 313.63 wind 9.0 270 < th dose dependent rect. 3 3
265 313.81 radiation 1.0 270 > th dose dependent sin 7 NA
279 313.92 radiation 40.0 90 < th dose dependent sin 1 NA
286 313.99 humidity 70.0 90 > th dose independent rect. 4 15
302 314.14 radiation 20.0 90 < th dose independent rect. 13 20
399 315.32 temperature 15.0 90 > th dose independent rect. 17 15
403 315.42 radiation 20.0 90 < th dose independent rect. 13 22
411 315.50 radiation 40.0 10 < th dose dependent rect. 5 15
430 315.62 temperature 10.0 90 > th dose dependent rect. 8 7
434 315.66 atmosphere 1000.0 90 > th dose dependent rect. 3 5
443 315.79 radiation 40.0 270 < th dose independent rect. 11 20
465 316.07 wind 9.0 10 < th dose independent rect. 8 21
474 316.23 wind 7.0 270 < th dose independent rect. 7 8
495 316.50 radiation 20.0 90 < th dose independent rect. 17 16
498 316.52 wind 5.0 10 < th dose independent rect. 5 3
501 316.54 humidity 60.0 90 > th dose dependent rect. 4 15
508 316.65 temperature 10.0 90 > th dose dependent rect. 8 19
519 316.81 humidity 90.0 90 < th dose independent rect. 8 7
523 316.85 temperature 15.0 90 > th dose independent rect. 15 17
527 316.88 atmosphere 995.0 270 > th dose dependent rect. 3 3
533 316.93 humidity 90.0 90 < th dose independent rect. 8 9
546 317.10 radiation 40.0 90 < th dose dependent rect. 3 22
560 317.23 radiation 1.0 90 > th dose dependent sin 1 NA
575 317.45 precipitation 0.1 90 < th dose independent rect. 8 9
576 317.45 precipitation 0.1 90 < th dose dependent rect. 8 9
577 317.46 temperature 15.0 90 > th dose independent rect. 8 9
588 317.57 humidity 50.0 90 > th dose independent rect. 17 15
590 317.61 wind 1.0 90 > th dose independent rect. 5 3
600 317.70 radiation 1.0 10 > th dose dependent rect. 8 10
613 317.73 temperature 30.0 270 < th dose dependent rect. 3 2
614 317.75 radiation 20.0 90 < th dose independent rect. 3 22
616 317.78 radiation 10.0 270 > th dose independent sin 5 NA
627 317.95 precipitation 0.1 10 < th dose independent rect. 5 3
629 317.95 precipitation 0.1 10 < th dose dependent rect. 5 3
643 317.97 temperature 10.0 90 > th dose dependent rect. 8 9
648 318.02 radiation 40.0 10 < th dose independent rect. 5 3
657 318.06 radiation 10.0 270 > th dose independent rect. 17 21
665 318.11 temperature 10.0 10 > th dose independent rect. 5 3
667 318.11 temperature 30.0 10 < th dose independent rect. 5 3
668 318.11 humidity 50.0 10 > th dose independent rect. 5 3
670 318.11 atmosphere 995.0 10 > th dose independent rect. 5 3
671 318.11 atmosphere 1015.0 10 < th dose independent rect. 5 3
673 318.11 temperature 10.0 10 > th dose independent rect. 8 21
677 318.14 humidity 90.0 90 < th dose dependent rect. 8 7
689 318.18 humidity 50.0 270 > th dose dependent rect. 3 3
705 318.29 temperature 15.0 90 > th dose independent rect. 8 7
708 318.34 atmosphere 995.0 90 > th dose independent rect. 17 15
716 318.41 radiation 40.0 90 < th dose independent rect. 17 15
728 318.45 atmosphere 1015.0 90 < th dose independent rect. 8 9
759 318.60 temperature 10.0 270 > th dose dependent rect. 3 3
760 318.60 wind 9.0 270 < th dose dependent rect. 7 19
775 318.68 radiation 1.0 270 > th dose dependent rect. 16 21
811 318.84 wind 9.0 270 < th dose dependent rect. 7 7
831 319.02 radiation 10.0 270 > th dose independent rect. 6 8
852 319.07 precipitation 0.1 90 < th dose independent rect. 8 7
853 319.07 precipitation 0.1 90 < th dose dependent rect. 8 7
859 319.10 humidity 90.0 10 < th dose dependent rect. 8 7
863 319.14 temperature 10.0 10 > th dose dependent rect. 8 21
910 319.22 atmosphere 995.0 90 > th dose independent rect. 15 17
939 319.31 wind 9.0 10 < th dose dependent rect. 5 3
940 319.32 humidity 90.0 30 < th dose independent rect. 3 5
943 319.34 wind 9.0 90 < th dose independent rect. 17 15
966 319.40 radiation 20.0 270 < th dose independent sin 8 NA
975 319.44 precipitation 0.1 270 < th dose independent rect. 19 8
976 319.44 precipitation 0.1 270 < th dose dependent rect. 19 8