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Os05g0571100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF860, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0274) R2 : 0.86
β1 : 1.63 (0.101) R2dD : 0.0844 R2D : 0.0775
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.24 (0.0645) R2dE : 0.778 R2E : 0.768
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.15 (0.0586) R2dN8 : 0.0027 R2N8 : 0.00868
σ : 0.513
deviance : 121.48
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 22.17
memory length : 236
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 3.6
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.82 0.458 11.2 1.52 2.6 -1.85 -2.01 -1.59 -0.126 14.9 1.031 271 19.9 --
96.68 0.458 11.2 1.58 2.68 -1.82 -1.54 -- -0.119 14.9 2.539 251 20.1 --
103.79 0.475 11.2 1.66 2.78 -1.61 -- -0.102 -0.131 14.8 9.434 210 20.6 --
103.43 0.474 11.2 1.64 2.83 -1.64 -- -- -0.147 14.8 9.7 206 20.3 --
117.75 0.505 11.2 1.65 -- -3.25 -- 1.12 -0.138 -- 26.65 227 3.64 --
142.03 0.559 11.2 1.67 3.41 -- -1.06 -- -0.124 15.4 -- -- -- --
145.53 0.565 11.2 1.65 3.4 -- -- -- -0.13 15.4 -- -- -- --
121.48 0.513 11.2 1.63 -- -3.24 -- -- -0.15 -- 22.17 236 3.6 --
163.5 0.596 11.3 -- 2.75 -1.91 -- -- -0.322 15.1 0.5598 260 19.3 --
795.91 1.32 11.2 1.5 -- -- -- -- -0.22 -- -- -- -- --
217.03 0.689 11.3 -- 3.37 -- -- -- -0.314 15.4 -- -- -- --
192.05 0.645 11.3 -- -- -3.2 -- -- -0.327 -- 22.83 234 3.61 --
855.53 1.37 11.3 -- -- -- -- -- -0.387 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 88.38 radiation 40.0 270 < th dose dependent rect. 15 15
2 89.91 radiation 10.0 270 < th dose dependent rect. 1 18
4 90.05 temperature 10.0 90 > th dose dependent rect. 7 20
7 90.21 precipitation 0.1 270 < th dose independent rect. 6 20
8 90.21 precipitation 0.1 270 < th dose dependent rect. 6 20
9 90.33 wind 7.0 270 < th dose independent rect. 6 20
10 90.39 radiation 1.0 270 < th dose independent rect. 2 17
11 90.41 precipitation 0.1 270 < th dose independent rect. 5 22
12 90.41 precipitation 0.1 270 < th dose dependent rect. 5 22
13 90.61 wind 9.0 270 < th dose independent rect. 5 22
17 91.52 radiation 20.0 270 < th dose independent rect. 15 15
19 91.73 temperature 10.0 10 > th dose dependent rect. 8 19
24 91.97 wind 7.0 270 < th dose independent rect. 2 4
26 92.09 radiation 1.0 270 < th dose dependent rect. 3 2
28 92.16 temperature 10.0 270 > th dose independent rect. 2 4
30 92.16 temperature 30.0 270 < th dose independent rect. 2 4
31 92.16 humidity 50.0 270 > th dose independent rect. 2 4
34 92.16 atmosphere 995.0 270 > th dose independent rect. 2 4
35 92.16 atmosphere 1015.0 270 < th dose independent rect. 2 4
36 92.16 radiation 20.0 270 < th dose independent rect. 2 4
39 92.16 temperature 10.0 270 > th dose independent rect. 6 20
40 92.18 radiation 40.0 270 < th dose dependent rect. 2 4
43 92.22 wind 7.0 270 < th dose independent rect. 3 2
48 92.28 precipitation 0.1 270 < th dose independent rect. 2 4
49 92.28 precipitation 0.1 270 < th dose dependent rect. 2 4
54 92.44 temperature 10.0 270 > th dose independent rect. 3 2
56 92.44 temperature 30.0 270 < th dose independent rect. 3 2
57 92.44 humidity 50.0 270 > th dose independent rect. 3 2
60 92.44 atmosphere 995.0 270 > th dose independent rect. 3 2
61 92.44 atmosphere 1010.0 270 < th dose independent rect. 3 2
63 92.44 radiation 20.0 270 < th dose independent rect. 3 2
66 92.44 temperature 10.0 270 > th dose independent rect. 5 22
69 92.48 radiation 40.0 270 < th dose dependent rect. 3 2
74 92.57 wind 1.0 270 > th dose independent rect. 2 3
76 92.65 radiation 1.0 270 < th dose independent rect. 3 2
80 92.76 temperature 30.0 90 < th dose dependent rect. 3 18
83 93.01 precipitation 0.1 270 < th dose independent rect. 3 2
84 93.01 precipitation 0.1 270 < th dose dependent rect. 3 2
88 93.15 radiation 10.0 270 < th dose dependent rect. 2 12
121 93.88 temperature 30.0 90 < th dose dependent rect. 3 16
141 93.95 radiation 10.0 270 < th dose dependent rect. 24 21
151 94.07 radiation 10.0 270 < th dose independent rect. 1 6
170 94.17 radiation 10.0 270 < th dose dependent rect. 2 7
179 94.35 wind 1.0 270 > th dose independent rect. 3 1
181 94.36 atmosphere 995.0 270 > th dose dependent rect. 2 4
186 94.44 temperature 30.0 90 < th dose dependent rect. 3 4
190 94.47 temperature 30.0 270 < th dose dependent rect. 3 2
218 94.96 temperature 15.0 270 > th dose independent rect. 11 10
219 94.96 atmosphere 995.0 270 > th dose dependent rect. 3 2
224 95.02 radiation 1.0 270 < th dose dependent sin 2 NA
234 95.22 humidity 50.0 270 > th dose independent rect. 15 15
243 95.28 atmosphere 995.0 10 > th dose dependent rect. 3 5
268 95.62 wind 9.0 90 < th dose dependent rect. 3 4
271 95.65 wind 9.0 10 < th dose independent rect. 8 19
340 96.17 radiation 40.0 270 < th dose independent rect. 11 19
344 96.48 radiation 1.0 270 < th dose independent sin 2 NA
346 96.51 atmosphere 1015.0 270 < th dose independent rect. 10 11
347 96.52 temperature 30.0 90 < th dose dependent rect. 3 14
356 96.64 wind 9.0 270 < th dose dependent rect. 3 2
362 96.70 humidity 50.0 270 > th dose dependent rect. 3 2
363 96.74 wind 7.0 270 < th dose independent rect. 21 14
364 96.76 wind 9.0 270 < th dose independent rect. 6 10
370 96.85 radiation 40.0 10 < th dose independent rect. 3 5
373 96.91 wind 9.0 10 < th dose independent rect. 3 5
374 96.91 temperature 10.0 10 > th dose independent rect. 3 5
376 96.91 temperature 30.0 10 < th dose independent rect. 3 5
377 96.91 humidity 50.0 10 > th dose independent rect. 3 5
379 96.91 atmosphere 995.0 10 > th dose independent rect. 3 5
380 96.91 atmosphere 1015.0 10 < th dose independent rect. 3 5
381 96.91 temperature 10.0 10 > th dose independent rect. 8 19
410 97.10 precipitation 0.1 10 < th dose independent rect. 3 5
412 97.10 precipitation 0.1 10 < th dose dependent rect. 3 5
417 97.13 humidity 50.0 270 > th dose independent rect. 21 14
455 97.42 temperature 10.0 270 > th dose independent rect. 21 14
456 97.42 atmosphere 995.0 270 > th dose independent rect. 21 14
480 97.62 precipitation 0.1 270 < th dose independent rect. 21 14
481 97.62 precipitation 0.1 270 < th dose dependent rect. 21 14
500 97.84 precipitation 0.1 270 < th dose independent rect. 6 10
501 97.84 precipitation 0.1 270 < th dose dependent rect. 6 10
503 97.86 humidity 50.0 270 > th dose dependent rect. 2 4
511 97.93 wind 9.0 270 < th dose dependent rect. 6 20
526 98.12 temperature 15.0 270 > th dose independent rect. 15 15
557 98.47 humidity 50.0 270 > th dose independent rect. 2 17
569 98.54 radiation 10.0 10 < th dose independent rect. 3 20
573 98.56 temperature 10.0 270 > th dose independent rect. 6 10
574 98.56 atmosphere 1015.0 270 < th dose independent rect. 6 10
595 98.80 atmosphere 995.0 270 > th dose independent rect. 16 14
596 98.80 radiation 20.0 10 < th dose dependent rect. 3 20
603 98.93 atmosphere 995.0 90 > th dose independent rect. 7 20
606 98.96 humidity 50.0 270 > th dose independent rect. 1 19
621 99.19 wind 9.0 1440 < th dose independent rect. 4 5
622 99.19 temperature 10.0 1440 > th dose independent rect. 4 5
625 99.19 humidity 50.0 1440 > th dose independent rect. 4 5
627 99.19 atmosphere 995.0 1440 > th dose independent rect. 4 5
628 99.19 atmosphere 1015.0 1440 < th dose independent rect. 4 5
629 99.19 temperature 10.0 1440 > th dose independent rect. 9 19
646 99.39 wind 9.0 270 < th dose independent rect. 16 14
647 99.39 wind 9.0 10 < th dose dependent rect. 3 5
648 99.40 radiation 1.0 270 > th dose independent sin 2 NA
664 99.53 temperature 30.0 270 < th dose independent rect. 1 18
667 99.55 humidity 60.0 90 > th dose dependent rect. 3 19
730 99.92 wind 1.0 270 > th dose independent rect. 6 19
756 100.11 atmosphere 995.0 270 > th dose independent rect. 11 10
768 100.17 temperature 10.0 270 > th dose dependent rect. 2 4
772 100.19 temperature 10.0 270 > th dose dependent rect. 3 2
773 100.22 radiation 20.0 10 < th dose dependent rect. 5 18
839 100.62 humidity 60.0 10 > th dose dependent rect. 3 20
851 100.74 wind 1.0 270 > th dose independent rect. 11 10
856 100.77 temperature 30.0 90 < th dose dependent rect. 3 8
898 101.05 atmosphere 1015.0 270 < th dose independent rect. 1 20
902 101.08 atmosphere 995.0 270 > th dose independent rect. 6 9
910 101.15 temperature 10.0 270 > th dose dependent rect. 6 7
919 101.20 humidity 50.0 270 > th dose independent rect. 11 9
948 101.27 temperature 10.0 90 > th dose dependent rect. 7 10
953 101.30 wind 9.0 270 < th dose independent rect. 11 10
955 101.31 radiation 40.0 10 < th dose dependent rect. 3 5
968 101.39 temperature 10.0 270 > th dose dependent rect. 7 3
969 101.39 temperature 10.0 270 > th dose dependent rect. 6 5
971 101.42 temperature 15.0 270 > th dose independent rect. 1 20
986 101.51 wind 7.0 270 < th dose independent rect. 21 4
998 101.59 temperature 30.0 90 < th dose independent rect. 17 14
999 101.59 atmosphere 995.0 10 > th dose independent rect. 8 19