Os12g0130100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Tyrosine-specific protein phosphatase-like protein.
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Os12g0130100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Tyrosine-specific protein phosphatase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.64 | 0.478 | 4.45 | 1.01 | 2.8 | -1.12 | 2.31 | -1.44 | 0.451 | 19.3 | 5.5 | 630 | -- | -- |
| 104.62 | 0.476 | 4.47 | 1.04 | 2.8 | -0.91 | 2.11 | -- | 0.434 | 19.2 | 5.6 | 598 | -- | -- |
| 115.73 | 0.501 | 4.47 | 0.969 | 2.85 | -1.11 | -- | 0.0907 | 0.433 | 19.2 | 5.5 | 589 | -- | -- |
| 115.73 | 0.501 | 4.47 | 0.958 | 2.85 | -1.13 | -- | -- | 0.435 | 19.2 | 5.523 | 589 | -- | -- |
| 479.92 | 1.03 | 4.39 | 1.25 | -- | 0.419 | -- | -0.452 | 0.436 | -- | 5.5 | 589 | -- | -- |
| 113.11 | 0.499 | 4.46 | 1.24 | 2.6 | -- | 2.45 | -- | 0.46 | 19.1 | -- | -- | -- | -- |
| 128.75 | 0.531 | 4.46 | 1.19 | 2.61 | -- | -- | -- | 0.467 | 19 | -- | -- | -- | -- |
| 349.53 | 0.871 | 4.41 | 1.67 | -- | 1.62 | -- | -- | 0.371 | -- | 3 | 351 | -- | -- |
| 137.99 | 0.547 | 4.49 | -- | 2.9 | -1.42 | -- | -- | 0.366 | 19.2 | 5.241 | 631 | -- | -- |
| 488.18 | 1.03 | 4.4 | 1.14 | -- | -- | -- | -- | 0.42 | -- | -- | -- | -- | -- |
| 166.18 | 0.603 | 4.49 | -- | 2.6 | -- | -- | -- | 0.335 | 19.1 | -- | -- | -- | -- |
| 419.03 | 0.953 | 4.45 | -- | -- | 1.37 | -- | -- | 0.198 | -- | 3.1 | 351 | -- | -- |
| 522.45 | 1.07 | 4.43 | -- | -- | -- | -- | -- | 0.293 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.41 | wind | 9 | 720 | < th | dose dependent | rect. | 7 | 7 |
| 4 | 95.08 | wind | 5 | 720 | < th | dose independent | rect. | 7 | 7 |
| 28 | 97.28 | wind | 9 | 720 | < th | dose dependent | sin | 2 | NA |
| 29 | 97.31 | wind | 5 | 720 | > th | dose independent | rect. | 8 | 5 |
| 32 | 97.36 | wind | 3 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 33 | 97.37 | wind | 1 | 720 | > th | dose dependent | rect. | 6 | 7 |
| 93 | 98.45 | wind | 5 | 720 | < th | dose independent | sin | 3 | NA |
| 99 | 98.51 | wind | 9 | 720 | < th | dose dependent | rect. | 3 | 16 |
| 127 | 98.74 | wind | 9 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 237 | 99.73 | wind | 5 | 720 | < th | dose independent | rect. | 5 | 13 |
| 263 | 99.84 | wind | 5 | 720 | < th | dose independent | rect. | 3 | 15 |
| 283 | 99.94 | wind | 1 | 720 | > th | dose dependent | sin | 3 | NA |
| 297 | 100.06 | wind | 9 | 270 | < th | dose dependent | rect. | 11 | 8 |
| 364 | 100.40 | wind | 5 | 720 | > th | dose independent | sin | 3 | NA |
| 382 | 100.49 | wind | 9 | 720 | < th | dose dependent | rect. | 23 | 16 |
| 388 | 100.52 | wind | 5 | 270 | < th | dose independent | rect. | 11 | 8 |
| 492 | 101.16 | wind | 5 | 720 | < th | dose independent | rect. | 7 | 17 |
| 511 | 101.26 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 10 |
| 544 | 101.39 | radiation | 30 | 720 | < th | dose independent | sin | 9 | NA |
| 565 | 101.49 | radiation | 30 | 720 | < th | dose independent | rect. | 19 | 17 |
| 567 | 101.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 6 |
| 577 | 101.55 | wind | 1 | 720 | > th | dose dependent | rect. | 4 | 16 |
| 599 | 101.61 | radiation | 30 | 720 | < th | dose independent | rect. | 1 | 11 |
| 611 | 101.63 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 8 |
| 615 | 101.64 | radiation | 30 | 720 | < th | dose independent | rect. | 3 | 9 |
| 631 | 101.67 | radiation | 30 | 720 | < th | dose independent | rect. | 21 | 15 |
| 720 | 101.90 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 8 |
| 796 | 102.10 | wind | 9 | 720 | < th | dose dependent | rect. | 7 | 16 |
| 842 | 102.22 | wind | 7 | 30 | < th | dose independent | rect. | 13 | 8 |
| 907 | 102.36 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 919 | 102.39 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 9 |
| 923 | 102.40 | temperature | 25 | 270 | < th | dose independent | rect. | 10 | 9 |
| 969 | 102.50 | wind | 9 | 270 | < th | dose independent | rect. | 22 | 23 |
| 976 | 102.52 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 9 |