Os06g0265900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF860, plant family protein.
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Os06g0265900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF860, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120.93 | 0.517 | 8 | 0.259 | 1.16 | 0.896 | -0.302 | 0.231 | -0.544 | 20.1 | 41.14 | 624 | -- | -- |
| 120.95 | 0.512 | 8 | 0.239 | 1.16 | 0.917 | -0.259 | -- | -0.553 | 20.1 | 40.82 | 623 | -- | -- |
| 121.18 | 0.513 | 8 | 0.262 | 1.17 | 0.887 | -- | 0.118 | -0.545 | 20.1 | 41.11 | 624 | -- | -- |
| 121.15 | 0.513 | 8 | 0.247 | 1.16 | 0.904 | -- | -- | -0.552 | 20.1 | 40.79 | 625 | -- | -- |
| 171.1 | 0.609 | 8 | 0.261 | -- | 1.52 | -- | 0.227 | -0.672 | -- | 40.66 | 715 | -- | -- |
| 139.16 | 0.553 | 7.98 | 0.364 | 1.64 | -- | 0.119 | -- | -0.407 | 19.3 | -- | -- | -- | -- |
| 139.2 | 0.553 | 7.98 | 0.361 | 1.64 | -- | -- | -- | -0.407 | 19.3 | -- | -- | -- | -- |
| 170.74 | 0.609 | 8.01 | 0.185 | -- | 1.58 | -- | -- | -0.694 | -- | 40.67 | 715 | -- | -- |
| 122.73 | 0.516 | 8 | -- | 1.16 | 0.923 | -- | -- | -0.583 | 20.2 | 40.45 | 625 | -- | -- |
| 281.29 | 0.784 | 7.94 | 0.333 | -- | -- | -- | -- | -0.435 | -- | -- | -- | -- | -- |
| 142.64 | 0.559 | 7.99 | -- | 1.63 | -- | -- | -- | -0.447 | 19.3 | -- | -- | -- | -- |
| 171.31 | 0.61 | 8.01 | -- | -- | 1.59 | -- | -- | -0.733 | -- | 40.67 | 715 | -- | -- |
| 284.22 | 0.787 | 7.95 | -- | -- | -- | -- | -- | -0.471 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 115.38 | temperature | 25 | 10 | > th | dose independent | rect. | 16 | 7 |
| 3 | 117.24 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 6 |
| 27 | 119.42 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 6 |
| 34 | 119.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 7 |
| 37 | 119.83 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 15 |
| 40 | 119.86 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 13 |
| 89 | 121.11 | temperature | 25 | 270 | > th | dose dependent | sin | 15 | NA |
| 90 | 121.12 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 1 | 9 |
| 108 | 121.47 | radiation | 40 | 270 | < th | dose independent | rect. | 19 | 20 |
| 134 | 121.92 | wind | 7 | 270 | < th | dose independent | rect. | 13 | 7 |
| 135 | 121.94 | wind | 7 | 90 | < th | dose independent | rect. | 15 | 5 |
| 148 | 122.13 | radiation | 40 | 720 | > th | dose independent | rect. | 9 | 1 |
| 150 | 122.18 | radiation | 10 | 270 | > th | dose dependent | rect. | 16 | 15 |
| 170 | 122.39 | radiation | 40 | 720 | > th | dose independent | rect. | 14 | 20 |
| 177 | 122.49 | radiation | 1 | 270 | > th | dose independent | rect. | 15 | 15 |
| 183 | 122.56 | radiation | 10 | 270 | > th | dose independent | rect. | 16 | 2 |
| 255 | 122.85 | humidity | 90 | 270 | < th | dose independent | rect. | 13 | 7 |
| 272 | 122.93 | radiation | 40 | 720 | > th | dose independent | rect. | 13 | 23 |
| 279 | 122.96 | radiation | 40 | 720 | > th | dose independent | sin | 12 | NA |
| 285 | 122.99 | radiation | 40 | 720 | < th | dose independent | rect. | 4 | 18 |
| 299 | 123.10 | radiation | 30 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 304 | 123.11 | radiation | 1 | 270 | > th | dose independent | sin | 14 | NA |
| 315 | 123.15 | radiation | 1 | 270 | < th | dose independent | sin | 14 | NA |
| 318 | 123.16 | radiation | 40 | 720 | > th | dose independent | sin | 8 | NA |
| 352 | 123.40 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 11 |
| 353 | 123.40 | temperature | 25 | 720 | > th | dose dependent | rect. | 2 | 17 |
| 357 | 123.44 | wind | 9 | 90 | < th | dose dependent | rect. | 15 | 5 |
| 359 | 123.45 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 14 |
| 367 | 123.49 | wind | 7 | 270 | < th | dose independent | rect. | 15 | 2 |
| 370 | 123.50 | radiation | 40 | 720 | > th | dose independent | rect. | 11 | 23 |
| 384 | 123.53 | temperature | 25 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 394 | 123.57 | radiation | 30 | 720 | > th | dose dependent | sin | 9 | NA |
| 402 | 123.59 | radiation | 30 | 720 | > th | dose dependent | rect. | 14 | 22 |
| 404 | 123.60 | radiation | 1 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 444 | 123.70 | radiation | 30 | 720 | > th | dose dependent | rect. | 7 | 3 |
| 479 | 123.77 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 5 | 9 |
| 528 | 123.81 | humidity | 50 | 90 | > th | dose independent | rect. | 19 | 23 |
| 534 | 123.82 | radiation | 30 | 720 | > th | dose dependent | rect. | 14 | 20 |
| 535 | 123.83 | radiation | 1 | 270 | < th | dose dependent | sin | 14 | NA |
| 551 | 123.83 | radiation | 40 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 557 | 123.87 | temperature | 25 | 720 | > th | dose dependent | sin | 23 | NA |
| 563 | 123.89 | radiation | 40 | 720 | < th | dose independent | rect. | 2 | 23 |
| 599 | 124.00 | radiation | 40 | 720 | > th | dose independent | rect. | 8 | 7 |
| 622 | 124.03 | radiation | 40 | 720 | < th | dose independent | sin | 10 | NA |
| 623 | 124.03 | humidity | 50 | 270 | > th | dose independent | rect. | 10 | 14 |
| 638 | 124.06 | radiation | 40 | 720 | > th | dose independent | no | NA | NA |
| 780 | 124.06 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 784 | 124.08 | radiation | 40 | 720 | < th | dose independent | rect. | 4 | 10 |
| 785 | 124.08 | wind | 7 | 270 | < th | dose independent | rect. | 15 | 15 |
| 864 | 124.18 | wind | 7 | 270 | < th | dose independent | rect. | 14 | 17 |
| 901 | 124.24 | radiation | 20 | 270 | < th | dose dependent | sin | 13 | NA |
| 907 | 124.25 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 2 |
| 938 | 124.31 | wind | 7 | 30 | < th | dose independent | rect. | 15 | 8 |
| 951 | 124.35 | wind | 7 | 270 | < th | dose independent | rect. | 22 | 22 |
| 961 | 124.38 | radiation | 40 | 720 | < th | dose independent | rect. | 17 | 23 |
| 976 | 124.43 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 9 |
| 977 | 124.43 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 19 | 19 |