FiT-DB / Search/ Help/ Sample detail

Os01g0293200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF860, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.7 (0.0309) R2 : 0.721
β1 : 2.46 (0.113) R2dD : 0.301 R2D : 0.245
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.29 (0.0888) R2dE : 0.41 R2E : 0.402
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.582 (0.0661) R2dN8 : 0.064 R2N8 : -0.000973
σ : 0.579
deviance : 154.52
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : -17.96
memory length : 979
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.37
open length of G : 7.71

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
141.21 0.558 6.8 2.48 2.26 2.21 0.532 1.24 0.546 20.5 8.787 272 5.17 9
142.3 0.556 6.79 2.42 2.27 2.26 -0.102 -- 0.574 20.7 7.053 308 5.23 8.58
141.38 0.554 6.8 2.5 2.3 2.35 -- 1.08 0.586 20.7 6.876 302 5.18 8.8
142.1 0.555 6.8 2.44 2.3 2.21 -- -- 0.555 20.7 7.348 320 5.17 8.39
153.92 0.578 6.7 2.53 -- 2.35 -- 1.29 0.596 -- -17.39 953 5.38 8.08
177.63 0.625 6.76 2.58 1.96 -- 0.728 -- 0.612 17.4 -- -- -- --
178.93 0.626 6.76 2.57 1.97 -- -- -- 0.615 17.4 -- -- -- --
154.52 0.579 6.7 2.46 -- 2.29 -- -- 0.582 -- -17.96 979 5.37 7.71
290.92 0.794 6.87 -- 2.24 2.74 -- -- 0.235 20.9 14.96 327 4.93 8.68
380.85 0.912 6.73 2.51 -- -- -- -- 0.566 -- -- -- -- --
353.52 0.88 6.82 -- 1.93 -- -- -- 0.328 17.4 -- -- -- --
293.1 0.797 6.81 -- -- 2.43 -- -- 0.14 -- 12.09 979 6.1 6.33
546.66 1.09 6.79 -- -- -- -- -- 0.288 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 142.12 temperature 10.0 270 > th dose dependent rect. 5 9
9 144.79 temperature 25.0 270 < th dose independent rect. 1 9
12 145.12 temperature 15.0 10 > th dose dependent rect. 6 10
16 146.17 temperature 25.0 90 < th dose independent rect. 3 8
24 146.61 temperature 25.0 90 < th dose independent rect. 3 16
25 146.74 temperature 25.0 90 < th dose independent rect. 3 18
28 146.88 temperature 25.0 90 < th dose independent rect. 3 12
30 146.93 temperature 25.0 90 < th dose independent rect. 3 14
31 146.99 temperature 25.0 90 < th dose independent rect. 3 10
37 147.30 temperature 30.0 10 < th dose dependent rect. 4 16
49 147.75 temperature 15.0 10 > th dose dependent rect. 9 7
53 147.89 temperature 30.0 90 < th dose dependent rect. 3 16
57 148.03 temperature 30.0 10 < th dose dependent rect. 4 18
69 148.49 temperature 30.0 90 < th dose dependent rect. 3 18
94 149.25 temperature 20.0 270 > th dose independent rect. 5 9
130 150.30 wind 9.0 270 < th dose dependent rect. 6 8
140 150.52 wind 7.0 270 < th dose independent rect. 6 8
148 150.76 radiation 40.0 270 < th dose dependent rect. 1 9
153 150.79 temperature 25.0 90 > th dose independent rect. 24 15
159 150.86 radiation 20.0 10 < th dose independent rect. 4 19
160 150.86 temperature 10.0 10 > th dose dependent rect. 9 19
162 150.91 temperature 10.0 90 > th dose dependent rect. 8 19
164 150.95 temperature 30.0 90 < th dose dependent rect. 3 8
171 151.08 temperature 25.0 90 > th dose independent rect. 4 11
188 151.31 atmosphere 1005.0 90 > th dose independent rect. 3 6
189 151.31 temperature 30.0 90 < th dose dependent rect. 3 10
190 151.33 atmosphere 1005.0 270 > th dose independent rect. 1 6
191 151.35 temperature 30.0 10 < th dose dependent rect. 4 8
196 151.40 temperature 30.0 90 < th dose dependent rect. 3 12
201 151.45 temperature 25.0 270 < th dose independent sin 6 NA
202 151.45 radiation 20.0 10 < th dose dependent rect. 4 19
207 151.62 temperature 10.0 10 > th dose dependent rect. 6 22
210 151.67 wind 7.0 90 < th dose independent rect. 9 18
249 152.21 radiation 40.0 270 < th dose independent rect. 14 16
266 152.42 atmosphere 995.0 270 > th dose independent rect. 14 16
270 152.45 temperature 10.0 270 > th dose dependent rect. 20 17
271 152.46 temperature 25.0 270 < th dose independent rect. 3 2
278 152.54 atmosphere 1005.0 10 > th dose independent rect. 4 5
295 152.72 precipitation 0.1 270 < th dose independent rect. 6 8
296 152.72 precipitation 0.1 270 < th dose dependent rect. 6 8
300 152.74 radiation 1.0 270 > th dose independent rect. 6 8
302 152.74 radiation 10.0 270 < th dose dependent rect. 1 18
314 152.82 radiation 1.0 270 < th dose independent rect. 1 18
316 152.83 atmosphere 1015.0 270 < th dose independent rect. 14 16
317 152.83 wind 9.0 270 < th dose dependent rect. 6 19
323 152.91 temperature 10.0 90 > th dose dependent rect. 22 17
327 152.93 atmosphere 995.0 270 > th dose independent rect. 6 8
328 152.93 atmosphere 1015.0 270 < th dose independent rect. 6 8
329 152.93 temperature 10.0 270 > th dose independent rect. 14 16
330 152.93 wind 9.0 90 < th dose dependent rect. 9 18
334 152.95 radiation 40.0 90 < th dose dependent rect. 3 7
342 153.00 radiation 20.0 270 < th dose independent rect. 1 8
349 153.03 wind 7.0 10 < th dose independent rect. 9 19
367 153.18 wind 7.0 270 < th dose independent rect. 6 19
369 153.19 atmosphere 1005.0 270 > th dose independent rect. 3 2
374 153.22 temperature 25.0 10 > th dose dependent rect. 24 16
375 153.23 temperature 25.0 90 < th dose independent sin 3 NA
377 153.25 wind 7.0 270 < th dose independent rect. 21 16
381 153.28 wind 9.0 270 < th dose independent rect. 14 16
400 153.35 atmosphere 1010.0 270 < th dose independent rect. 13 8
405 153.37 temperature 25.0 10 > th dose dependent rect. 20 20
410 153.39 temperature 25.0 10 > th dose dependent rect. 4 12
427 153.45 temperature 25.0 90 > th dose independent rect. 8 7
429 153.46 radiation 30.0 90 < th dose independent rect. 3 6
434 153.48 temperature 15.0 90 > th dose independent rect. 9 18
467 153.63 precipitation 0.1 90 < th dose independent rect. 9 18
468 153.63 precipitation 0.1 90 < th dose dependent rect. 9 18
472 153.66 atmosphere 995.0 270 > th dose independent rect. 1 18
483 153.69 precipitation 0.1 270 < th dose independent rect. 14 16
484 153.69 precipitation 0.1 270 < th dose dependent rect. 14 16
487 153.72 temperature 25.0 270 > th dose independent sin 6 NA
494 153.77 precipitation 0.1 90 < th dose independent rect. 3 6
497 153.77 precipitation 0.1 90 < th dose dependent rect. 3 6
506 153.83 precipitation 0.1 270 < th dose independent rect. 3 2
507 153.83 precipitation 0.1 270 < th dose dependent rect. 3 2
510 153.84 temperature 25.0 90 > th dose independent sin 3 NA
529 153.95 atmosphere 995.0 270 > th dose independent rect. 13 7
531 153.97 wind 5.0 270 < th dose independent rect. 1 5
533 153.97 radiation 1.0 270 > th dose independent rect. 18 20
537 153.99 radiation 1.0 270 < th dose dependent sin 2 NA
543 154.03 humidity 50.0 270 > th dose independent rect. 6 8
548 154.05 wind 7.0 270 < th dose independent rect. 5 22
549 154.06 precipitation 0.1 270 < th dose independent rect. 1 5
550 154.06 precipitation 0.1 270 < th dose dependent rect. 1 5
565 154.12 humidity 60.0 10 > th dose dependent rect. 4 16
581 154.15 radiation 40.0 10 < th dose dependent rect. 4 6
589 154.18 temperature 15.0 270 > th dose independent rect. 21 16
591 154.18 precipitation 0.1 270 < th dose independent rect. 6 19
593 154.18 precipitation 0.1 270 < th dose dependent rect. 6 19
595 154.19 wind 7.0 10 < th dose dependent rect. 4 5
604 154.25 precipitation 0.1 270 < th dose independent rect. 19 6
605 154.25 precipitation 0.1 270 < th dose dependent rect. 19 6
612 154.27 temperature 10.0 10 > th dose dependent rect. 23 17
623 154.31 wind 5.0 270 < th dose independent rect. 3 2
630 154.35 wind 9.0 270 < th dose independent rect. 19 6
633 154.36 temperature 10.0 270 > th dose independent rect. 19 6
634 154.36 temperature 30.0 270 < th dose independent rect. 19 6
635 154.36 humidity 50.0 270 > th dose independent rect. 19 6
636 154.36 atmosphere 995.0 270 > th dose independent rect. 19 6
637 154.36 radiation 1.0 270 < th dose independent rect. 19 6
643 154.36 temperature 10.0 270 > th dose independent rect. 1 18
644 154.36 atmosphere 1015.0 270 < th dose independent rect. 1 18
645 154.36 radiation 1.0 270 < th dose dependent rect. 19 6
650 154.37 wind 9.0 90 < th dose dependent rect. 3 6
686 154.50 wind 7.0 90 < th dose independent rect. 3 6
688 154.50 temperature 10.0 90 > th dose independent rect. 3 6
690 154.50 humidity 50.0 90 > th dose independent rect. 3 6
691 154.50 atmosphere 995.0 90 > th dose independent rect. 3 6
692 154.50 atmosphere 1015.0 90 < th dose independent rect. 3 6
694 154.50 temperature 15.0 270 > th dose independent rect. 6 19
700 154.52 precipitation 0.1 270 < th dose independent rect. 1 18
702 154.52 precipitation 0.1 270 < th dose dependent rect. 1 18
726 154.60 temperature 30.0 270 < th dose dependent rect. 1 9
730 154.63 precipitation 0.1 270 < th dose independent rect. 1 8
735 154.63 precipitation 0.1 270 < th dose dependent rect. 1 8
743 154.66 wind 1.0 270 > th dose independent rect. 13 7
744 154.66 humidity 70.0 90 > th dose independent rect. 3 8
754 154.70 temperature 15.0 270 > th dose independent rect. 9 15
813 154.81 humidity 50.0 90 > th dose dependent rect. 3 6
817 154.82 temperature 25.0 10 > th dose dependent sin 4 NA
820 154.83 wind 1.0 270 > th dose independent rect. 2 17
832 154.87 temperature 10.0 270 > th dose independent rect. 13 7
837 154.87 atmosphere 995.0 270 > th dose independent rect. 21 16
846 154.89 temperature 15.0 270 > th dose independent rect. 5 22
854 154.92 wind 1.0 270 > th dose independent rect. 11 10
859 154.93 temperature 30.0 90 < th dose dependent rect. 3 6
867 154.95 wind 9.0 270 < th dose dependent rect. 3 2
873 154.97 humidity 70.0 270 > th dose independent rect. 1 9
881 154.99 temperature 10.0 270 > th dose independent rect. 1 5
884 154.99 humidity 50.0 270 > th dose independent rect. 1 5
887 154.99 atmosphere 995.0 270 > th dose independent rect. 1 5
888 154.99 atmosphere 1015.0 270 < th dose independent rect. 1 5
889 154.99 radiation 20.0 270 < th dose independent rect. 1 5
916 155.05 humidity 50.0 90 > th dose dependent rect. 21 6
929 155.09 precipitation 0.1 270 < th dose independent rect. 5 22
930 155.09 temperature 30.0 720 > th dose dependent rect. 18 1
944 155.09 precipitation 0.1 270 < th dose dependent rect. 5 22
955 155.13 wind 9.0 270 < th dose independent rect. 13 7
965 155.15 temperature 30.0 10 < th dose dependent rect. 4 6
973 155.18 radiation 30.0 10 < th dose independent rect. 4 5
976 155.18 temperature 15.0 270 > th dose independent rect. 11 10
981 155.19 wind 9.0 270 < th dose independent rect. 1 18
983 155.19 radiation 40.0 90 < th dose dependent rect. 15 18
996 155.22 temperature 10.0 270 > th dose independent rect. 3 2
999 155.22 humidity 50.0 270 > th dose independent rect. 3 2