BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0550300 Os05g0550300|AK062463
(94 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0550300 Similar to Lipid transfer protein (Fragment) 128 9e-31
Os05g0550600 Similar to Nonspecific lipid-transfer protein ... 86 8e-18
Os10g0504650 78 1e-15
Os10g0504900 Similar to Lipid transfer protein 78 1e-15
Os03g0111300 Nonspecific lipid-transfer protein 2 (nsLTP2) ... 77 3e-15
Os10g0504700 76 4e-15
Os10g0505700 Similar to Nonspecific lipid-transfer protein ... 75 9e-15
Os01g0691100 Similar to Lipid transfer protein (Fragment) 73 4e-14
Os10g0505500 Similar to Nonspecific lipid-transfer protein ... 71 2e-13
Os06g0705400 Similar to Nonspecific lipid-transfer protein ... 68 1e-12
Os01g0691300 Plant lipid transfer/seed storage/trypsin-alph... 64 2e-11
Os10g0505000 Plant lipid transfer/seed storage/trypsin-alph... 64 3e-11
>Os05g0550300 Similar to Lipid transfer protein (Fragment)
Length = 94
Score = 128 bits (322), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 62/62 (100%), Positives = 62/62 (100%)
Query: 33 QLSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVP 92
QLSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVP
Sbjct: 33 QLSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVP 92
Query: 93 SC 94
SC
Sbjct: 93 SC 94
>Os05g0550600 Similar to Nonspecific lipid-transfer protein 2 (nsLTP2) (7 kDa
lipid transfer protein)
Length = 96
Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 33 QLSPCASAIIGNASPSASCCSRMKEQ-QPCLCQYARDPNLQRYVNSPNGKKVLAACHVPV 91
QL+PCA AI+GN+ P+A+CC ++K C CQY +DPN+++YVNSPNGKKV A C VP+
Sbjct: 34 QLTPCAPAIVGNSPPTAACCGKLKAHPASCFCQYKKDPNMKKYVNSPNGKKVFATCKVPL 93
Query: 92 PSC 94
P C
Sbjct: 94 PKC 96
>Os10g0504650
Length = 100
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 45/61 (73%)
Query: 34 LSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVPS 93
LSPCA+ I +PSASCCS +K QQ C CQYA+DP Y+NS N +K++AAC +P+P+
Sbjct: 39 LSPCAAPIFFGTAPSASCCSSLKAQQGCFCQYAKDPTYASYINSTNARKMIAACGIPLPN 98
Query: 94 C 94
C
Sbjct: 99 C 99
>Os10g0504900 Similar to Lipid transfer protein
Length = 82
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 44/61 (72%)
Query: 34 LSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVPS 93
LSPCA+ I +PSASCCS +K QQ C CQYA+DP Y+NS N +K++AAC +P P+
Sbjct: 21 LSPCAAPIFFGTAPSASCCSSLKAQQGCFCQYAKDPTYASYINSTNARKMIAACGIPFPN 80
Query: 94 C 94
C
Sbjct: 81 C 81
>Os03g0111300 Nonspecific lipid-transfer protein 2 (nsLTP2) (7 kDa lipid
transfer protein)
Length = 96
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 45/62 (72%)
Query: 33 QLSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVP 92
QL+ C AI G A P+A+CCS ++ QQ C CQ+A+DP RYVNSPN +K +++C + +P
Sbjct: 34 QLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALP 93
Query: 93 SC 94
+C
Sbjct: 94 TC 95
>Os10g0504700
Length = 100
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 45/61 (73%)
Query: 34 LSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVPS 93
LSPCA+ I +PSASCCS +K QQ C CQYA+DP Y+NS N +K++AAC +P+P+
Sbjct: 39 LSPCAAPIFFGTAPSASCCSSLKAQQGCFCQYAKDPMYASYINSTNARKMIAACGIPLPN 98
Query: 94 C 94
C
Sbjct: 99 C 99
>Os10g0505700 Similar to Nonspecific lipid-transfer protein 2 (nsLTP2) (7 kDa
lipid transfer protein)
Length = 91
Score = 75.5 bits (184), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 44/62 (70%)
Query: 33 QLSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVP 92
QL+ CA AIIG ++PSASCCS ++ Q+ C CQYAR+P Y+NS N +K L +C + +P
Sbjct: 30 QLAICAGAIIGGSTPSASCCSNLRAQRGCFCQYARNPAYASYINSANARKTLTSCGIAIP 89
Query: 93 SC 94
C
Sbjct: 90 RC 91
>Os01g0691100 Similar to Lipid transfer protein (Fragment)
Length = 103
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 47/61 (77%)
Query: 34 LSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVPS 93
L PCA+AI+ +PS +CC+ ++ Q+ CLC+YA++P+L++Y+NS N +KV AAC VP P
Sbjct: 43 LRPCAAAILWGEAPSTACCAGLRAQKRCLCRYAKNPDLRKYINSQNSRKVAAACSVPAPR 102
Query: 94 C 94
C
Sbjct: 103 C 103
>Os10g0505500 Similar to Nonspecific lipid-transfer protein 2G (LTP2G) (Lipid
transfer protein 2 isoform 1) (LTP2-1) (7 kDa lipid
transfer protein 1)
Length = 94
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 33 QLSPCASAIIGNASPSASCCSRMKEQQP--CLCQYARDPNLQRYVNSPNGKKVLAACHVP 90
QLS C S I +PS SCCS ++ QQ CLCQYA+DP YVN+ N +K +AAC +P
Sbjct: 31 QLSACVSPIFYGTAPSESCCSNLRAQQKEGCLCQYAKDPTYASYVNNTNARKTIAACGIP 90
Query: 91 VPSC 94
+PSC
Sbjct: 91 IPSC 94
>Os06g0705400 Similar to Nonspecific lipid-transfer protein 2P (LTP2P) (Lipid
transfer protein 2 isoform 2) (LTP2-2) (7 kDa lipid
transfer protein 2)
Length = 94
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 43/56 (76%)
Query: 34 LSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHV 89
LSPC SAI+ A+PS CC +++ QQPCLCQYARDP+ + YV SP+ ++ + AC+V
Sbjct: 35 LSPCMSAIMLGAAPSPGCCVQLRAQQPCLCQYARDPSYRSYVTSPSAQRAVKACNV 90
>Os01g0691300 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
domain containing protein
Length = 112
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 33 QLSPCASAI--IGNASPSASCCSRMKEQ-QPCLCQYARDPNLQRYVNSPNGKKVLAACHV 89
QLSPC SA +G SPS++CCS++K Q CLC Y DP ++R V+S K+V AC V
Sbjct: 48 QLSPCVSAFSGVGQGSPSSACCSKLKAQGSSCLCLYKDDPKVKRIVSSNRTKRVFTACKV 107
Query: 90 PVPSC 94
P P+C
Sbjct: 108 PAPNC 112
>Os10g0505000 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
domain containing protein
Length = 100
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 33 QLSPCASAIIGNASPSASCCS--RMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVP 90
+LS CA I +PS SCCS R +E+ C CQYARDP Y+NS N + +AAC +
Sbjct: 37 KLSACAVPIFFGTAPSKSCCSNLRAQEKDGCFCQYARDPMYASYINSTNARNTIAACGIA 96
Query: 91 VPSC 94
PSC
Sbjct: 97 FPSC 100
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.129 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,527,003
Number of extensions: 86513
Number of successful extensions: 314
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 13
Length of query: 94
Length of database: 17,035,801
Length adjustment: 63
Effective length of query: 31
Effective length of database: 13,746,319
Effective search space: 426135889
Effective search space used: 426135889
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)