Os05g0550600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nonspecific lipid-transfer protein 2 (nsLTP2) (7 kDa lipid transfer protein).
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Os05g0550600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nonspecific lipid-transfer protein 2 (nsLTP2) (7 kDa lipid transfer protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 224.96 | 0.705 | 3.58 | -1.89 | 0.0676 | -4.91 | 0.272 | 23.4 | -0.05 | 14.5 | 999.6 | 15 | -- | -- |
| 232.52 | 0.716 | 3.31 | -0.377 | 0.0418 | -0.753 | 0.262 | -- | -0.0514 | 15.8 | 999.6 | 15 | -- | -- |
| 225.18 | 0.704 | 3.58 | -1.87 | 0.0707 | -4.88 | -- | 23.3 | -0.0485 | 13.1 | 999.7 | 11 | -- | -- |
| 232.68 | 0.715 | 3.31 | -0.373 | 0.0491 | -0.754 | -- | -- | -0.05 | 13.5 | 999.7 | 11 | -- | -- |
| 225.49 | 0.703 | 3.58 | -1.86 | -- | -4.83 | -- | 23 | -0.0496 | -- | 999.7 | 11 | -- | -- |
| 247.59 | 0.738 | 3.32 | -0.248 | 0.0685 | -- | 0.277 | -- | -0.0997 | 14.8 | -- | -- | -- | -- |
| 247.82 | 0.737 | 3.32 | -0.241 | 0.0716 | -- | -- | -- | -0.0984 | 13.4 | -- | -- | -- | -- |
| 232.83 | 0.714 | 3.31 | -0.375 | -- | -0.757 | -- | -- | -0.0508 | -- | 999.6 | 12 | -- | -- |
| 236.24 | 0.72 | 3.3 | -- | 0.0574 | -0.691 | -- | -- | -0.0137 | 13.7 | 999.7 | 11 | -- | -- |
| 248.13 | 0.736 | 3.32 | -0.244 | -- | -- | -- | -- | -0.0999 | -- | -- | -- | -- | -- |
| 249.35 | 0.739 | 3.32 | -- | 0.0759 | -- | -- | -- | -0.0715 | 13.5 | -- | -- | -- | -- |
| 236.44 | 0.718 | 3.3 | -- | -- | -0.695 | -- | -- | -0.0144 | -- | 999.6 | 12 | -- | -- |
| 249.7 | 0.738 | 3.32 | -- | -- | -- | -- | -- | -0.0728 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 219.33 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 3 |
| 2 | 219.33 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 7 |
| 5 | 219.46 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 7 |
| 17 | 220.24 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 3 |
| 46 | 221.56 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 50 | 221.97 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 23 | 16 |
| 55 | 222.37 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 8 |
| 56 | 222.42 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 59 | 222.56 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 24 | 14 |
| 60 | 222.56 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 21 | 18 |
| 161 | 224.00 | atmosphere | 1000 | 10 | < th | dose independent | sin | 4 | NA |
| 200 | 224.59 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 4 |
| 221 | 224.81 | atmosphere | 1000 | 10 | > th | dose independent | sin | 4 | NA |
| 278 | 225.29 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 288 | 225.37 | temperature | 25 | 4320 | < th | dose independent | sin | 10 | NA |
| 297 | 225.46 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 317 | 225.61 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 23 | 2 |
| 318 | 225.61 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 22 | 4 |
| 323 | 225.65 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 355 | 225.89 | temperature | 25 | 4320 | > th | dose independent | sin | 10 | NA |
| 367 | 225.96 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 21 | 10 |
| 374 | 225.98 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 20 | 20 |
| 382 | 226.02 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 20 | 6 |
| 437 | 226.29 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 18 | 22 |
| 450 | 226.37 | atmosphere | 1000 | 270 | > th | dose independent | sin | 8 | NA |
| 470 | 226.48 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 24 | 17 |
| 560 | 226.78 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 5 | 23 |
| 567 | 226.82 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 1 | 23 |
| 584 | 226.89 | atmosphere | 1000 | 10 | > th | dose independent | no | NA | NA |
| 586 | 226.89 | atmosphere | 1000 | 10 | < th | dose independent | no | NA | NA |
| 588 | 226.89 | atmosphere | 1005 | 90 | < th | dose dependent | sin | 4 | NA |
| 598 | 226.93 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 13 | 23 |
| 600 | 226.94 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 7 | 23 |
| 625 | 227.02 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 626 | 227.02 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 628 | 227.02 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 9 | 23 |
| 635 | 227.05 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 22 | 17 |
| 667 | 227.15 | atmosphere | 1000 | 30 | < th | dose independent | rect. | 11 | 23 |
| 782 | 227.60 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 21 | 16 |
| 840 | 227.85 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 4 | 7 |
| 912 | 228.09 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 9 |