BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0550600 Os05g0550600|AK119689
(96 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G18280.1 | chr3:6267102-6267392 FORWARD LENGTH=97 78 9e-16
AT1G48750.1 | chr1:18036019-18036303 FORWARD LENGTH=95 71 1e-13
AT5G38170.1 | chr5:15227717-15228028 FORWARD LENGTH=104 67 2e-12
AT5G38160.1 | chr5:15225836-15226147 FORWARD LENGTH=104 65 5e-12
AT1G73780.1 | chr1:27743872-27744168 FORWARD LENGTH=99 64 1e-11
AT1G66850.1 | chr1:24936985-24937293 FORWARD LENGTH=103 64 2e-11
AT1G43667.1 | chr1:16465170-16465466 REVERSE LENGTH=99 62 8e-11
AT2G14846.1 | chr2:6382430-6382729 FORWARD LENGTH=100 60 2e-10
AT5G38195.1 | chr5:15246991-15247278 FORWARD LENGTH=96 56 3e-09
AT1G07747.1 | chr1:2403558-2403845 FORWARD LENGTH=96 56 4e-09
AT1G43666.1 | chr1:16461181-16461471 REVERSE LENGTH=97 55 1e-08
AT3G57310.1 | chr3:21208200-21208511 REVERSE LENGTH=104 52 7e-08
AT5G38180.1 | chr5:15229856-15230143 FORWARD LENGTH=96 50 3e-07
AT1G43665.1 | chr1:16452981-16453804 REVERSE LENGTH=124 49 7e-07
AT4G12825.1 | chr4:7529471-7529758 FORWARD LENGTH=96 45 6e-06
>AT3G18280.1 | chr3:6267102-6267392 FORWARD LENGTH=97
Length = 96
Score = 77.8 bits (190), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Query: 29 TCTPTQLTPCAPAIVGNSPPTAACCGKLKAHPASCFCQYKKDPNMKKYVNSPNGKKVFAT 88
TC+P QL+PCA AI +SPP+A CC KLK C C Y ++P+++++V++PN +KV +
Sbjct: 30 TCSPMQLSPCATAITSSSPPSALCCAKLKEQ-RPCLCGYMRNPSLRRFVSTPNARKVSKS 88
Query: 89 CKVPLPKC 96
CK+P+P+C
Sbjct: 89 CKLPIPRC 96
>AT1G48750.1 | chr1:18036019-18036303 FORWARD LENGTH=95
Length = 94
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 29 TCTPTQLTPCAPAIVGNSPPTAACCGKLKAHPASCFCQYKKDPNMKKYVNSPNGKKVFAT 88
TC+P QL CA A+ +SPP+ ACC KL+ C C Y ++P +++YV+SPN +KV +
Sbjct: 28 TCSPMQLASCAAAMTSSSPPSEACCTKLREQ-QPCLCGYMRNPTLRQYVSSPNARKVSNS 86
Query: 89 CKVPLPKC 96
CK+P P C
Sbjct: 87 CKIPSPSC 94
>AT5G38170.1 | chr5:15227717-15228028 FORWARD LENGTH=104
Length = 103
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 29 TCTPTQLTPCAPAIVGNSPPTAACCGKLKAHPASCFCQYKKDPNMKKYVNSPNGKKVFAT 88
TC QL+ CA ++ PP+ CCGKLK CFC Y KDP +YV S N KK AT
Sbjct: 37 TCDAVQLSSCATPMLTGVPPSTECCGKLKEQ-QPCFCTYIKDPRYSQYVGSANAKKTLAT 95
Query: 89 CKVPLPKC 96
C VP P C
Sbjct: 96 CGVPYPTC 103
>AT5G38160.1 | chr5:15225836-15226147 FORWARD LENGTH=104
Length = 103
Score = 65.5 bits (158), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 29 TCTPTQLTPCAPAIVGNSPPTAACCGKLKAHPASCFCQYKKDPNMKKYVNSPNGKKVFAT 88
TC TQL+ C A+ +PP+ CCGKLK H +C C Y ++P YV SPN +K A
Sbjct: 37 TCDATQLSSCVTAVSTGAPPSTDCCGKLKEHE-TCLCTYIQNPLYSSYVTSPNARKTLAA 95
Query: 89 CKVPLPKC 96
C V P C
Sbjct: 96 CDVAYPTC 103
>AT1G73780.1 | chr1:27743872-27744168 FORWARD LENGTH=99
Length = 98
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 30 CTPTQLTPCAPAIVGNSPPTAACCGKLKAHPASCFCQYKKDPNMKKYVNSPNGKKVFATC 89
C P QL+PC I+ S P+ CC K+K C CQY K+PN K ++NSPN K + C
Sbjct: 33 CNPAQLSPCLETIMKGSEPSDLCCSKVKEQ-QHCICQYLKNPNFKSFLNSPNAKIIATDC 91
Query: 90 KVPLPKC 96
P PKC
Sbjct: 92 HCPYPKC 98
>AT1G66850.1 | chr1:24936985-24937293 FORWARD LENGTH=103
Length = 102
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 29 TCTPTQLTPCAPAIVGNSPPTAACCGKLKAHPASCFCQYKKDPNMKKYVNSPNGKKVFAT 88
TC QL PC AI G P+ ACC KL SC C + K+P +Y++SPN +KV
Sbjct: 36 TCDARQLQPCLAAITGGGQPSGACCAKLTEQQ-SCLCGFAKNPAFAQYISSPNARKVLLA 94
Query: 89 CKVPLPKC 96
C V P C
Sbjct: 95 CNVAYPTC 102
>AT1G43667.1 | chr1:16465170-16465466 REVERSE LENGTH=99
Length = 98
Score = 61.6 bits (148), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 30 CTPTQLTPCAPAIVGNSPPTAACCGKLKAHPASCFCQYKKDPNMKKYVNSPNGKKVFATC 89
CT T+L PC P+++ S P+ CC KLK SCFC Y ++P +Y+ + K++ A C
Sbjct: 35 CTVTELQPCLPSVIDGSQPSTQCCEKLKEQ-NSCFCDYLQNPQFSQYITA--AKQILAAC 91
Query: 90 KVPLPKC 96
K+P P C
Sbjct: 92 KIPYPNC 98
>AT2G14846.1 | chr2:6382430-6382729 FORWARD LENGTH=100
Length = 99
Score = 60.1 bits (144), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 33 TQLTPCAPAIVGNSPPTAACCGKLKAHPASCFCQYKKDPNMKKYVNSPNGKKVFATCKVP 92
T L C PA+ S P+ CCGKLK SC C Y K P+ +YV+S +KV C +P
Sbjct: 37 TDLRVCLPAVEAGSQPSVQCCGKLKEQ-LSCLCGYLKIPSFTQYVSSGKAQKVLTACAIP 95
Query: 93 LPKC 96
+PKC
Sbjct: 96 IPKC 99
>AT5G38195.1 | chr5:15246991-15247278 FORWARD LENGTH=96
Length = 95
Score = 56.2 bits (134), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 29 TCTPTQLTPCAPAIVGNSPPTAACCGKLKAHPASCFCQYKKDPNMKKYVNSPNGKKVFAT 88
+C PT+L PC PA+ PT CC KL C C Y +P +V+SP +KV
Sbjct: 29 SCIPTELMPCLPAMTTGGQPTKDCCDKLIEQ-KECLCGYINNPLYSTFVSSPVARKVLEV 87
Query: 89 CKVPLPKC 96
C +P P C
Sbjct: 88 CNIPYPSC 95
>AT1G07747.1 | chr1:2403558-2403845 FORWARD LENGTH=96
Length = 95
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 30 CTPTQLTPCAPAIVGNSPPTAACCGKLKAHPASCFCQYKKDPNMKKYVNSPNGKKVFATC 89
C T L C P I+G +PP+ CC KLK SCFC+Y K+P + Y+ S K+V C
Sbjct: 29 CVVTDLKACLPDIIGETPPSTKCCTKLK-DKKSCFCEYLKNPLIAPYMTS--AKQVLEAC 85
Query: 90 KVPLPKC 96
VP+P C
Sbjct: 86 GVPVPVC 92
>AT1G43666.1 | chr1:16461181-16461471 REVERSE LENGTH=97
Length = 96
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 29 TCTPTQLTPCAPAIVGNSPPTAACCGKLKAHPASCFCQYKKDPNMKKYVNSPNGKKVFAT 88
TC T+ C P I+ SPP+ CC KLK SC C Y P++ +Y+ N K+V
Sbjct: 31 TCDFTKFQVCKPEIITGSPPSEECCEKLKEQ-QSCLCAYLISPSISQYIG--NAKRVIRA 87
Query: 89 CKVPLPKC 96
C +P P C
Sbjct: 88 CGIPFPNC 95
>AT3G57310.1 | chr3:21208200-21208511 REVERSE LENGTH=104
Length = 103
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 30 CTPTQLTPCAPAIVGNSPPTAACCGKLKAHPASCFCQYKKDPNMKKYVNSPNGKKVFATC 89
C T L C PAI+ S P A CC LK SC C Y K P YV N K+ A C
Sbjct: 38 CIVTNLMSCLPAILKGSQPPAYCCEMLKEQ-QSCLCGYIKSPTFGHYVIPQNAHKLLAAC 96
Query: 90 KVPLPKC 96
+ PKC
Sbjct: 97 GILYPKC 103
>AT5G38180.1 | chr5:15229856-15230143 FORWARD LENGTH=96
Length = 95
Score = 49.7 bits (117), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 29 TCTPTQLTPCAPAIVGNSPPTAACCGKLKAHPASCFCQYKKDPNMKKYVNSPNGKKVFAT 88
+C P +L PC PA+ PT CC L +C C Y K+P + S +KV T
Sbjct: 29 SCVPMELMPCLPAMTKREQPTKDCCENLIKQ-KTCLCDYIKNPLYSMFTISLVARKVLET 87
Query: 89 CKVPLPKC 96
C VP C
Sbjct: 88 CNVPYTSC 95
>AT1G43665.1 | chr1:16452981-16453804 REVERSE LENGTH=124
Length = 123
Score = 48.5 bits (114), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 30 CTPTQLTPCAPAIVGNSPPTAACCGKLKAHPASCFCQYKKDPNMKKYVNSPNGKKVFATC 89
C T L C A+ PP+A CC LK SC C Y ++P+++KY+ +KVFA C
Sbjct: 34 CIVTDLQVCLSALETPIPPSAECCKNLKIQ-KSCLCDYMENPSIEKYLEP--ARKVFAAC 90
Query: 90 KVPLPK 95
+P P+
Sbjct: 91 GMPYPR 96
>AT4G12825.1 | chr4:7529471-7529758 FORWARD LENGTH=96
Length = 95
Score = 45.4 bits (106), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 29 TCTPTQLTPCAPAIVGNSPPTAACCGKLKAHPASCFCQYKKDPNMKKYVNSPNGKKVFAT 88
TC L C A+ +P + CC KLK SCFC+Y KDP + Y+ K + A
Sbjct: 31 TCVMANLQICKSAVTTGNPHSKECCEKLKEQQ-SCFCEYLKDPLVVPYITY--AKIILAA 87
Query: 89 CKVPLPKC 96
C + P C
Sbjct: 88 CGLSFPNC 95
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.133 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,839,953
Number of extensions: 66206
Number of successful extensions: 192
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 16
Length of query: 96
Length of database: 11,106,569
Length adjustment: 66
Effective length of query: 30
Effective length of database: 9,297,113
Effective search space: 278913390
Effective search space used: 278913390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)