FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0705400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nonspecific lipid-transfer protein 2P (LTP2P) (Lipid transfer protein 2 isoform 2) (LTP2-2) (7 kDa lipid transfer protein 2).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.13 (0.0516) R2 : 0.647
β1 : -7.69 (0.285) R2dD : 1.47 R2D : 0.00762
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.766 (0.186) R2dE : 0.0154 R2E : -0.0925
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -12.2 (0.84) R2dD*E : 0.422 R2D*E : -0.832
γ1 : -1.65 (0.12) R2dN8 : 0.259 R2N8 : -0.118
σ : 0.916
deviance : 386.85
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.77
memory length : 4429
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16
open length of G : 15.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
377.72 0.913 5.12 -7.72 0.415 0.771 -0.427 -12.2 -1.67 5.72 0.7702 4427 16 15.1
538.23 1.08 5.15 -4.77 0.412 1.24 -0.0368 -- -1.39 5.92 0.2389 4310 14.5 14
377.99 0.906 5.12 -7.72 0.415 0.772 -- -12.2 -1.67 5.26 0.77 4427 16 15.1
513.3 1.06 5.15 -4.81 0.437 2.13 -- -- -1.37 5.85 0.17 4312 14.7 14.2
386.85 0.916 5.13 -7.69 -- 0.766 -- -12.2 -1.65 -- 0.77 4429 16 15.1
582.32 1.13 4.88 -4.34 0.376 -- -0.477 -- -0.839 6.23 -- -- -- --
582.72 1.13 4.88 -4.35 0.377 -- -- -- -0.838 5.71 -- -- -- --
516.99 1.06 5.15 -4.8 -- 2.21 -- -- -1.37 -- 0.17 4286 14.7 14.2
944.5 1.43 4.9 -- 0.042 2.19 -- -- -0.852 17.3 9.707 4255 15.5 14.2
590.11 1.14 4.88 -4.34 -- -- -- -- -0.829 -- -- -- -- --
1081.9 1.54 4.77 -- 0.313 -- -- -- -0.353 6.34 -- -- -- --
507.15 1.05 4.57 -- -- 3.62 -- -- 0.578 -- 7.929 47520 18.3 9.3
1086.98 1.54 4.78 -- -- -- -- -- -0.347 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 379.53 temperature 20 43200 < th dose independent rect. 22 14
9 379.76 temperature 20 43200 > th dose independent rect. 22 15
11 379.77 temperature 20 43200 > th dose independent rect. 6 1
17 379.81 temperature 20 43200 < th dose independent sin 6 NA
25 379.90 temperature 20 43200 < th dose independent rect. 1 10
33 379.95 temperature 20 43200 < th dose independent rect. 6 1
35 379.98 temperature 20 43200 > th dose independent sin 6 NA
47 380.06 radiation 1 43200 < th dose dependent rect. 16 1
49 380.10 temperature 20 43200 < th dose independent rect. 5 3
81 380.33 temperature 20 43200 > th dose independent rect. 5 3
96 380.50 temperature 20 43200 < th dose independent rect. 4 5
100 380.51 temperature 20 43200 > th dose independent rect. 3 7
351 381.96 temperature 20 43200 < th dose independent rect. 22 2
361 381.99 radiation 1 43200 < th dose independent rect. 18 11
391 382.14 temperature 20 43200 > th dose independent no NA NA
398 382.18 temperature 20 43200 < th dose independent rect. 21 7
405 382.22 radiation 1 43200 < th dose dependent rect. 6 23
406 382.23 temperature 20 43200 > th dose independent rect. 21 7
420 382.35 temperature 20 43200 < th dose independent no NA NA
431 382.44 radiation 1 43200 < th dose dependent rect. 6 17
437 382.47 radiation 1 43200 < th dose dependent rect. 6 13
531 383.22 temperature 20 43200 < th dose independent rect. 1 2
555 383.49 radiation 1 43200 > th dose independent rect. 14 3
566 383.64 radiation 1 43200 < th dose independent rect. 14 3
587 383.95 temperature 20 43200 > th dose independent rect. 1 2
594 384.04 radiation 1 43200 < th dose independent rect. 16 1
642 384.45 radiation 1 43200 > th dose independent rect. 10 7
645 384.47 radiation 1 14400 < th dose dependent rect. 17 16
668 384.75 radiation 1 14400 < th dose dependent rect. 18 14
677 384.82 radiation 1 43200 < th dose independent rect. 10 7
684 384.95 radiation 1 43200 > th dose independent rect. 6 11
686 384.99 radiation 1 14400 < th dose dependent rect. 17 21
693 385.08 radiation 1 14400 < th dose dependent sin 11 NA
696 385.13 radiation 1 43200 < th dose independent rect. 6 11
713 385.38 radiation 1 43200 < th dose dependent sin 0 NA
785 386.41 radiation 1 43200 < th dose dependent rect. 4 13
804 386.65 temperature 25 43200 < th dose dependent rect. 18 7
806 386.67 temperature 25 43200 < th dose dependent rect. 22 1
807 386.67 temperature 25 43200 < th dose dependent rect. 20 4
826 386.78 radiation 1 43200 < th dose independent rect. 18 8
830 386.80 radiation 1 43200 < th dose dependent rect. 21 20
845 386.90 temperature 25 43200 < th dose dependent rect. 9 21
847 386.91 temperature 25 43200 < th dose dependent rect. 10 19
857 386.95 temperature 25 43200 < th dose dependent sin 15 NA
862 386.96 temperature 25 43200 < th dose dependent rect. 17 21
898 387.05 radiation 1 43200 < th dose independent rect. 18 1
956 387.17 temperature 25 43200 < th dose dependent no NA NA
976 387.20 temperature 25 43200 < th dose dependent rect. 2 23