BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0705400 Os06g0705400|AK062667
(94 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G73780.1 | chr1:27743872-27744168 FORWARD LENGTH=99 66 5e-12
AT5G38160.1 | chr5:15225836-15226147 FORWARD LENGTH=104 65 1e-11
AT1G66850.1 | chr1:24936985-24937293 FORWARD LENGTH=103 64 1e-11
AT3G18280.1 | chr3:6267102-6267392 FORWARD LENGTH=97 63 4e-11
AT1G48750.1 | chr1:18036019-18036303 FORWARD LENGTH=95 61 1e-10
AT5G38195.1 | chr5:15246991-15247278 FORWARD LENGTH=96 59 4e-10
AT5G38170.1 | chr5:15227717-15228028 FORWARD LENGTH=104 57 1e-09
AT5G38180.1 | chr5:15229856-15230143 FORWARD LENGTH=96 50 2e-07
AT1G43667.1 | chr1:16465170-16465466 REVERSE LENGTH=99 49 4e-07
AT2G14846.1 | chr2:6382430-6382729 FORWARD LENGTH=100 49 5e-07
AT3G57310.1 | chr3:21208200-21208511 REVERSE LENGTH=104 49 7e-07
AT5G38197.1 | chr5:15251024-15251314 FORWARD LENGTH=97 47 2e-06
AT1G43666.1 | chr1:16461181-16461471 REVERSE LENGTH=97 47 2e-06
>AT1G73780.1 | chr1:27743872-27744168 FORWARD LENGTH=99
Length = 98
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 43/60 (71%)
Query: 30 CNPSALSPCMSAIMLGAAPSPGCCVQLRAQQPCLCQYARDPSYRSYVTSPSAQRAVKACN 89
CNP+ LSPC+ IM G+ PS CC +++ QQ C+CQY ++P+++S++ SP+A+ C+
Sbjct: 33 CNPAQLSPCLETIMKGSEPSDLCCSKVKEQQHCICQYLKNPNFKSFLNSPNAKIIATDCH 92
>AT5G38160.1 | chr5:15225836-15226147 FORWARD LENGTH=104
Length = 103
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 43/61 (70%)
Query: 30 CNPSALSPCMSAIMLGAAPSPGCCVQLRAQQPCLCQYARDPSYRSYVTSPSAQRAVKACN 89
C+ + LS C++A+ GA PS CC +L+ + CLC Y ++P Y SYVTSP+A++ + AC+
Sbjct: 38 CDATQLSSCVTAVSTGAPPSTDCCGKLKEHETCLCTYIQNPLYSSYVTSPNARKTLAACD 97
Query: 90 V 90
V
Sbjct: 98 V 98
>AT1G66850.1 | chr1:24936985-24937293 FORWARD LENGTH=103
Length = 102
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 42/61 (68%)
Query: 30 CNPSALSPCMSAIMLGAAPSPGCCVQLRAQQPCLCQYARDPSYRSYVTSPSAQRAVKACN 89
C+ L PC++AI G PS CC +L QQ CLC +A++P++ Y++SP+A++ + ACN
Sbjct: 37 CDARQLQPCLAAITGGGQPSGACCAKLTEQQSCLCGFAKNPAFAQYISSPNARKVLLACN 96
Query: 90 V 90
V
Sbjct: 97 V 97
>AT3G18280.1 | chr3:6267102-6267392 FORWARD LENGTH=97
Length = 96
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 43/61 (70%)
Query: 30 CNPSALSPCMSAIMLGAAPSPGCCVQLRAQQPCLCQYARDPSYRSYVTSPSAQRAVKACN 89
C+P LSPC +AI + PS CC +L+ Q+PCLC Y R+PS R +V++P+A++ K+C
Sbjct: 31 CSPMQLSPCATAITSSSPPSALCCAKLKEQRPCLCGYMRNPSLRRFVSTPNARKVSKSCK 90
Query: 90 V 90
+
Sbjct: 91 L 91
>AT1G48750.1 | chr1:18036019-18036303 FORWARD LENGTH=95
Length = 94
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 30 CNPSALSPCMSAIMLGAAPSPGCCVQLRAQQPCLCQYARDPSYRSYVTSPSAQRAVKACN 89
C+P L+ C +A+ + PS CC +LR QQPCLC Y R+P+ R YV+SP+A++ +C
Sbjct: 29 CSPMQLASCAAAMTSSSPPSEACCTKLREQQPCLCGYMRNPTLRQYVSSPNARKVSNSCK 88
Query: 90 V 90
+
Sbjct: 89 I 89
>AT5G38195.1 | chr5:15246991-15247278 FORWARD LENGTH=96
Length = 95
Score = 59.3 bits (142), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 30 CNPSALSPCMSAIMLGAAPSPGCCVQLRAQQPCLCQYARDPSYRSYVTSPSAQRAVKACN 89
C P+ L PC+ A+ G P+ CC +L Q+ CLC Y +P Y ++V+SP A++ ++ CN
Sbjct: 30 CIPTELMPCLPAMTTGGQPTKDCCDKLIEQKECLCGYINNPLYSTFVSSPVARKVLEVCN 89
Query: 90 V 90
+
Sbjct: 90 I 90
>AT5G38170.1 | chr5:15227717-15228028 FORWARD LENGTH=104
Length = 103
Score = 57.4 bits (137), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 30 CNPSALSPCMSAIMLGAAPSPGCCVQLRAQQPCLCQYARDPSYRSYVTSPSAQRAVKACN 89
C+ LS C + ++ G PS CC +L+ QQPC C Y +DP Y YV S +A++ + C
Sbjct: 38 CDAVQLSSCATPMLTGVPPSTECCGKLKEQQPCFCTYIKDPRYSQYVGSANAKKTLATCG 97
Query: 90 V 90
V
Sbjct: 98 V 98
>AT5G38180.1 | chr5:15229856-15230143 FORWARD LENGTH=96
Length = 95
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 30 CNPSALSPCMSAIMLGAAPSPGCCVQLRAQQPCLCQYARDPSYRSYVTSPSAQRAVKACN 89
C P L PC+ A+ P+ CC L Q+ CLC Y ++P Y + S A++ ++ CN
Sbjct: 30 CVPMELMPCLPAMTKREQPTKDCCENLIKQKTCLCDYIKNPLYSMFTISLVARKVLETCN 89
Query: 90 V 90
V
Sbjct: 90 V 90
>AT1G43667.1 | chr1:16465170-16465466 REVERSE LENGTH=99
Length = 98
Score = 49.3 bits (116), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 30 CNPSALSPCMSAIMLGAAPSPGCCVQLRAQQPCLCQYARDPSYRSYVTSPSAQRAVKACN 89
C + L PC+ +++ G+ PS CC +L+ Q C C Y ++P + Y+T +A++ + AC
Sbjct: 35 CTVTELQPCLPSVIDGSQPSTQCCEKLKEQNSCFCDYLQNPQFSQYIT--AAKQILAACK 92
Query: 90 V 90
+
Sbjct: 93 I 93
>AT2G14846.1 | chr2:6382430-6382729 FORWARD LENGTH=100
Length = 99
Score = 48.9 bits (115), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 33 SALSPCMSAIMLGAAPSPGCCVQLRAQQPCLCQYARDPSYRSYVTSPSAQRAVKACNV 90
+ L C+ A+ G+ PS CC +L+ Q CLC Y + PS+ YV+S AQ+ + AC +
Sbjct: 37 TDLRVCLPAVEAGSQPSVQCCGKLKEQLSCLCGYLKIPSFTQYVSSGKAQKVLTACAI 94
>AT3G57310.1 | chr3:21208200-21208511 REVERSE LENGTH=104
Length = 103
Score = 48.5 bits (114), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 30 CNPSALSPCMSAIMLGAAPSPGCCVQLRAQQPCLCQYARDPSYRSYVTSPSAQRAVKACN 89
C + L C+ AI+ G+ P CC L+ QQ CLC Y + P++ YV +A + + AC
Sbjct: 38 CIVTNLMSCLPAILKGSQPPAYCCEMLKEQQSCLCGYIKSPTFGHYVIPQNAHKLLAACG 97
Query: 90 V 90
+
Sbjct: 98 I 98
>AT5G38197.1 | chr5:15251024-15251314 FORWARD LENGTH=97
Length = 96
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 38 CMSAIMLGAAPSPGCCVQLRAQQPCLCQYARDPSYRSYVTSPSAQRAVKACNV 90
C+ A+ G P+ CC L Q+ LC Y +P Y + TSP+A++ ++ CN+
Sbjct: 39 CLPAMTTGGQPTKDCCNTLIGQKESLCGYITNPLYYLFFTSPAARKVLEVCNI 91
>AT1G43666.1 | chr1:16461181-16461471 REVERSE LENGTH=97
Length = 96
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 30 CNPSALSPCMSAIMLGAAPSPGCCVQLRAQQPCLCQYARDPSYRSYVTSPSAQRAVKACN 89
C+ + C I+ G+ PS CC +L+ QQ CLC Y PS Y+ +A+R ++AC
Sbjct: 32 CDFTKFQVCKPEIITGSPPSEECCEKLKEQQSCLCAYLISPSISQYIG--NAKRVIRACG 89
Query: 90 V 90
+
Sbjct: 90 I 90
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.129 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,398,549
Number of extensions: 40233
Number of successful extensions: 124
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 14
Length of query: 94
Length of database: 11,106,569
Length adjustment: 64
Effective length of query: 30
Effective length of database: 9,351,945
Effective search space: 280558350
Effective search space used: 280558350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)