BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0705400 Os06g0705400|AK062667
(94 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0705400 Similar to Nonspecific lipid-transfer protein ... 134 1e-32
Os10g0504650 73 6e-14
Os10g0504900 Similar to Lipid transfer protein 72 6e-14
Os10g0504700 70 3e-13
Os05g0550300 Similar to Lipid transfer protein (Fragment) 69 7e-13
Os10g0505500 Similar to Nonspecific lipid-transfer protein ... 69 9e-13
Os01g0691100 Similar to Lipid transfer protein (Fragment) 67 3e-12
Os03g0111300 Nonspecific lipid-transfer protein 2 (nsLTP2) ... 65 8e-12
Os11g0620300 Similar to Nonspecific lipid-transfer protein ... 65 9e-12
Os10g0505000 Plant lipid transfer/seed storage/trypsin-alph... 65 1e-11
Os10g0505700 Similar to Nonspecific lipid-transfer protein ... 64 2e-11
>Os06g0705400 Similar to Nonspecific lipid-transfer protein 2P (LTP2P) (Lipid
transfer protein 2 isoform 2) (LTP2-2) (7 kDa lipid
transfer protein 2)
Length = 94
Score = 134 bits (337), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/94 (76%), Positives = 72/94 (76%)
Query: 1 MAGINRKXXXXXXXXXXXXXXXXXXXXXXCNPSALSPCMSAIMLGAAPSPGCCVQLRAQQ 60
MAGINRK CNPSALSPCMSAIMLGAAPSPGCCVQLRAQQ
Sbjct: 1 MAGINRKGGAAAAYAVALLLAAGAADAAGCNPSALSPCMSAIMLGAAPSPGCCVQLRAQQ 60
Query: 61 PCLCQYARDPSYRSYVTSPSAQRAVKACNVKANC 94
PCLCQYARDPSYRSYVTSPSAQRAVKACNVKANC
Sbjct: 61 PCLCQYARDPSYRSYVTSPSAQRAVKACNVKANC 94
>Os10g0504650
Length = 100
Score = 72.8 bits (177), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 42/61 (68%)
Query: 30 CNPSALSPCMSAIMLGAAPSPGCCVQLRAQQPCLCQYARDPSYRSYVTSPSAQRAVKACN 89
C+P LSPC + I G APS CC L+AQQ C CQYA+DP+Y SY+ S +A++ + AC
Sbjct: 34 CDPGLLSPCAAPIFFGTAPSASCCSSLKAQQGCFCQYAKDPTYASYINSTNARKMIAACG 93
Query: 90 V 90
+
Sbjct: 94 I 94
>Os10g0504900 Similar to Lipid transfer protein
Length = 82
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 42/61 (68%)
Query: 30 CNPSALSPCMSAIMLGAAPSPGCCVQLRAQQPCLCQYARDPSYRSYVTSPSAQRAVKACN 89
C+P LSPC + I G APS CC L+AQQ C CQYA+DP+Y SY+ S +A++ + AC
Sbjct: 16 CDPGLLSPCAAPIFFGTAPSASCCSSLKAQQGCFCQYAKDPTYASYINSTNARKMIAACG 75
Query: 90 V 90
+
Sbjct: 76 I 76
>Os10g0504700
Length = 100
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 41/61 (67%)
Query: 30 CNPSALSPCMSAIMLGAAPSPGCCVQLRAQQPCLCQYARDPSYRSYVTSPSAQRAVKACN 89
C+P LSPC + I G APS CC L+AQQ C CQYA+DP Y SY+ S +A++ + AC
Sbjct: 34 CDPGLLSPCAAPIFFGTAPSASCCSSLKAQQGCFCQYAKDPMYASYINSTNARKMIAACG 93
Query: 90 V 90
+
Sbjct: 94 I 94
>Os05g0550300 Similar to Lipid transfer protein (Fragment)
Length = 94
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 30 CNPSALSPCMSAIMLGAAPSPGCCVQLRAQQPCLCQYARDPSYRSYVTSPSAQRAVKACN 89
C+ LSPC SAI+ A+PS CC +++ QQPCLCQYARDP+ + YV SP+ ++ + AC+
Sbjct: 29 CDALQLSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACH 88
Query: 90 V 90
V
Sbjct: 89 V 89
>Os10g0505500 Similar to Nonspecific lipid-transfer protein 2G (LTP2G) (Lipid
transfer protein 2 isoform 1) (LTP2-1) (7 kDa lipid
transfer protein 1)
Length = 94
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 30 CNPSALSPCMSAIMLGAAPSPGCCVQLRAQQP--CLCQYARDPSYRSYVTSPSAQRAVKA 87
C+P LS C+S I G APS CC LRAQQ CLCQYA+DP+Y SYV + +A++ + A
Sbjct: 27 CDPEQLSACVSPIFYGTAPSESCCSNLRAQQKEGCLCQYAKDPTYASYVNNTNARKTIAA 86
Query: 88 CNV 90
C +
Sbjct: 87 CGI 89
>Os01g0691100 Similar to Lipid transfer protein (Fragment)
Length = 103
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 30 CNPSALSPCMSAIMLGAAPSPGCCVQLRAQQPCLCQYARDPSYRSYVTSPSAQRAVKACN 89
C+P AL PC +AI+ G APS CC LRAQ+ CLC+YA++P R Y+ S ++++ AC+
Sbjct: 38 CDPLALRPCAAAILWGEAPSTACCAGLRAQKRCLCRYAKNPDLRKYINSQNSRKVAAACS 97
Query: 90 VKA 92
V A
Sbjct: 98 VPA 100
>Os03g0111300 Nonspecific lipid-transfer protein 2 (nsLTP2) (7 kDa lipid
transfer protein)
Length = 96
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%)
Query: 31 NPSALSPCMSAIMLGAAPSPGCCVQLRAQQPCLCQYARDPSYRSYVTSPSAQRAVKACNV 90
N L+ C AI GA P+ CC LRAQQ C CQ+A+DP Y YV SP+A++AV +C +
Sbjct: 31 NAGQLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGI 90
>Os11g0620300 Similar to Nonspecific lipid-transfer protein 2 (LTP 2)
Length = 110
Score = 65.5 bits (158), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 38/61 (62%)
Query: 30 CNPSALSPCMSAIMLGAAPSPGCCVQLRAQQPCLCQYARDPSYRSYVTSPSAQRAVKACN 89
CNP+ L+PC + G P CC QLRAQ CLC YAR P+Y SY+ SP+A+R C
Sbjct: 44 CNPTLLTPCAGPALFGGPVPPACCAQLRAQAACLCAYARSPNYGSYIRSPNARRLFAVCG 103
Query: 90 V 90
+
Sbjct: 104 L 104
>Os10g0505000 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
domain containing protein
Length = 100
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 30 CNPSALSPCMSAIMLGAAPSPGCCVQLRAQQP--CLCQYARDPSYRSYVTSPSAQRAVKA 87
C+P LS C I G APS CC LRAQ+ C CQYARDP Y SY+ S +A+ + A
Sbjct: 33 CDPGKLSACAVPIFFGTAPSKSCCSNLRAQEKDGCFCQYARDPMYASYINSTNARNTIAA 92
Query: 88 CNV 90
C +
Sbjct: 93 CGI 95
>Os10g0505700 Similar to Nonspecific lipid-transfer protein 2 (nsLTP2) (7 kDa
lipid transfer protein)
Length = 91
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 30 CNPSALSPCMSAIMLGAAPSPGCCVQLRAQQPCLCQYARDPSYRSYVTSPSAQRAVKACN 89
CN L+ C AI+ G+ PS CC LRAQ+ C CQYAR+P+Y SY+ S +A++ + +C
Sbjct: 26 CNAGQLAICAGAIIGGSTPSASCCSNLRAQRGCFCQYARNPAYASYINSANARKTLTSCG 85
Query: 90 V 90
+
Sbjct: 86 I 86
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.129 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,403,414
Number of extensions: 76720
Number of successful extensions: 336
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 11
Length of query: 94
Length of database: 17,035,801
Length adjustment: 63
Effective length of query: 31
Effective length of database: 13,746,319
Effective search space: 426135889
Effective search space used: 426135889
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)