Os03g0111300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nonspecific lipid-transfer protein 2 (nsLTP2) (7 kDa lipid transfer protein).
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Os03g0111300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nonspecific lipid-transfer protein 2 (nsLTP2) (7 kDa lipid transfer protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 389.02 | 0.927 | 3.42 | 1.19 | 0.458 | -1.04 | -1.08 | 15.7 | -0.399 | 0.623 | 32.47 | 3919 | -- | -- |
| 412.62 | 0.946 | 3.79 | -1.18 | 0.255 | 0.853 | -0.947 | -- | -0.951 | 22.3 | 32.7 | 8343 | -- | -- |
| 393.71 | 0.924 | 3.41 | 1.31 | 0.463 | -1.12 | -- | 16.4 | -0.392 | 0.193 | 32.56 | 3277 | -- | -- |
| 408.83 | 0.942 | 3.74 | -1.04 | 0.448 | 0.618 | -- | -- | -0.732 | 0.231 | 32.38 | 9086 | -- | -- |
| 407.12 | 0.94 | 3.39 | 1.37 | -- | -1.08 | -- | 16.4 | -0.383 | -- | 32.75 | 3327 | -- | -- |
| 421.29 | 0.962 | 3.73 | -0.939 | 0.538 | -- | -0.933 | -- | -0.527 | 0.744 | -- | -- | -- | -- |
| 424.94 | 0.965 | 3.72 | -0.903 | 0.54 | -- | -- | -- | -0.522 | 0.539 | -- | -- | -- | -- |
| 414.72 | 0.948 | 3.69 | -1.07 | -- | 0.825 | -- | -- | -0.363 | -- | 32.7 | 2523 | -- | -- |
| 425.6 | 0.961 | 3.64 | -- | 0.445 | 0.729 | -- | -- | -0.3 | 0.53 | 34.98 | 5731 | -- | -- |
| 443.26 | 0.984 | 3.71 | -0.884 | -- | -- | -- | -- | -0.513 | -- | -- | -- | -- | -- |
| 446.45 | 0.988 | 3.7 | -- | 0.527 | -- | -- | -- | -0.422 | 0.455 | -- | -- | -- | -- |
| 435.05 | 0.971 | 3.66 | -- | -- | 1.34 | -- | -- | -0.285 | -- | 35.35 | 5635 | -- | -- |
| 463.89 | 1.01 | 3.69 | -- | -- | -- | -- | -- | -0.415 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 379.39 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 3 | 379.66 | radiation | 20 | 1440 | < th | dose dependent | rect. | 12 | 5 |
| 21 | 380.73 | radiation | 20 | 1440 | < th | dose dependent | rect. | 12 | 16 |
| 23 | 380.75 | radiation | 20 | 1440 | < th | dose dependent | rect. | 12 | 13 |
| 92 | 381.99 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 5 |
| 167 | 382.76 | radiation | 10 | 1440 | > th | dose independent | sin | 18 | NA |
| 181 | 383.10 | radiation | 20 | 1440 | < th | dose dependent | sin | 17 | NA |
| 265 | 384.59 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 268 | 384.60 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 548 | 387.92 | radiation | 10 | 1440 | < th | dose independent | sin | 16 | NA |
| 663 | 388.80 | radiation | 1 | 1440 | > th | dose dependent | rect. | 14 | 3 |
| 738 | 389.33 | radiation | 1 | 1440 | > th | dose dependent | rect. | 12 | 5 |
| 743 | 389.37 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 5 |
| 800 | 389.55 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 875 | 389.57 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 5 |
| 946 | 389.98 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 950 | 390.01 | temperature | 30 | 1440 | > th | dose dependent | rect. | 8 | 4 |
| 985 | 390.07 | temperature | 30 | 4320 | > th | dose dependent | rect. | 15 | 21 |
| 987 | 390.09 | radiation | 1 | 1440 | > th | dose dependent | sin | 16 | NA |
| 995 | 390.15 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 1 |