BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0111300 Os03g0111300|AK062506
(96 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0111300 Nonspecific lipid-transfer protein 2 (nsLTP2) ... 131 1e-31
Os10g0505700 Similar to Nonspecific lipid-transfer protein ... 91 2e-19
Os10g0504700 84 2e-17
Os10g0504650 84 3e-17
Os10g0504900 Similar to Lipid transfer protein 82 6e-17
Os10g0505500 Similar to Nonspecific lipid-transfer protein ... 77 2e-15
Os05g0550300 Similar to Lipid transfer protein (Fragment) 76 5e-15
Os10g0505000 Plant lipid transfer/seed storage/trypsin-alph... 74 2e-14
Os05g0550600 Similar to Nonspecific lipid-transfer protein ... 72 8e-14
Os06g0705400 Similar to Nonspecific lipid-transfer protein ... 64 3e-11
Os11g0620300 Similar to Nonspecific lipid-transfer protein ... 63 4e-11
>Os03g0111300 Nonspecific lipid-transfer protein 2 (nsLTP2) (7 kDa lipid
transfer protein)
Length = 96
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/63 (100%), Positives = 63/63 (100%)
Query: 34 QLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALP 93
QLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALP
Sbjct: 34 QLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALP 93
Query: 94 TCH 96
TCH
Sbjct: 94 TCH 96
>Os10g0505700 Similar to Nonspecific lipid-transfer protein 2 (nsLTP2) (7 kDa
lipid transfer protein)
Length = 91
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 52/62 (83%)
Query: 34 QLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALP 93
QL +C GAI GG+ P+A+CCS+LRAQ+GCFCQ+A++P Y Y+NS NARK ++SCGIA+P
Sbjct: 30 QLAICAGAIIGGSTPSASCCSNLRAQRGCFCQYARNPAYASYINSANARKTLTSCGIAIP 89
Query: 94 TC 95
C
Sbjct: 90 RC 91
>Os10g0504700
Length = 100
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 46/61 (75%)
Query: 35 LTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPT 94
L+ C I G P+A+CCSSL+AQQGCFCQ+AKDP Y Y+NS NARK +++CGI LP
Sbjct: 39 LSPCAAPIFFGTAPSASCCSSLKAQQGCFCQYAKDPMYASYINSTNARKMIAACGIPLPN 98
Query: 95 C 95
C
Sbjct: 99 C 99
>Os10g0504650
Length = 100
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 46/61 (75%)
Query: 35 LTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPT 94
L+ C I G P+A+CCSSL+AQQGCFCQ+AKDP Y Y+NS NARK +++CGI LP
Sbjct: 39 LSPCAAPIFFGTAPSASCCSSLKAQQGCFCQYAKDPTYASYINSTNARKMIAACGIPLPN 98
Query: 95 C 95
C
Sbjct: 99 C 99
>Os10g0504900 Similar to Lipid transfer protein
Length = 82
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 45/61 (73%)
Query: 35 LTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPT 94
L+ C I G P+A+CCSSL+AQQGCFCQ+AKDP Y Y+NS NARK +++CGI P
Sbjct: 21 LSPCAAPIFFGTAPSASCCSSLKAQQGCFCQYAKDPTYASYINSTNARKMIAACGIPFPN 80
Query: 95 C 95
C
Sbjct: 81 C 81
>Os10g0505500 Similar to Nonspecific lipid-transfer protein 2G (LTP2G) (Lipid
transfer protein 2 isoform 1) (LTP2-1) (7 kDa lipid
transfer protein 1)
Length = 94
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 46/64 (71%), Gaps = 2/64 (3%)
Query: 34 QLTVCTGAIAGGARPTAACCSSLRAQQ--GCFCQFAKDPRYGRYVNSPNARKAVSSCGIA 91
QL+ C I G P+ +CCS+LRAQQ GC CQ+AKDP Y YVN+ NARK +++CGI
Sbjct: 31 QLSACVSPIFYGTAPSESCCSNLRAQQKEGCLCQYAKDPTYASYVNNTNARKTIAACGIP 90
Query: 92 LPTC 95
+P+C
Sbjct: 91 IPSC 94
>Os05g0550300 Similar to Lipid transfer protein (Fragment)
Length = 94
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 45/62 (72%)
Query: 34 QLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALP 93
QL+ C AI G A P+A+CCS ++ QQ C CQ+A+DP RYVNSPN +K +++C + +P
Sbjct: 33 QLSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVP 92
Query: 94 TC 95
+C
Sbjct: 93 SC 94
>Os10g0505000 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
domain containing protein
Length = 100
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 46/64 (71%), Gaps = 2/64 (3%)
Query: 34 QLTVCTGAIAGGARPTAACCSSLRAQQ--GCFCQFAKDPRYGRYVNSPNARKAVSSCGIA 91
+L+ C I G P+ +CCS+LRAQ+ GCFCQ+A+DP Y Y+NS NAR +++CGIA
Sbjct: 37 KLSACAVPIFFGTAPSKSCCSNLRAQEKDGCFCQYARDPMYASYINSTNARNTIAACGIA 96
Query: 92 LPTC 95
P+C
Sbjct: 97 FPSC 100
>Os05g0550600 Similar to Nonspecific lipid-transfer protein 2 (nsLTP2) (7 kDa
lipid transfer protein)
Length = 96
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 34 QLTVCTGAIAGGARPTAACCSSLRAQQG-CFCQFAKDPRYGRYVNSPNARKAVSSCGIAL 92
QLT C AI G + PTAACC L+A CFCQ+ KDP +YVNSPN +K ++C + L
Sbjct: 34 QLTPCAPAIVGNSPPTAACCGKLKAHPASCFCQYKKDPNMKKYVNSPNGKKVFATCKVPL 93
Query: 93 PTC 95
P C
Sbjct: 94 PKC 96
>Os06g0705400 Similar to Nonspecific lipid-transfer protein 2P (LTP2P) (Lipid
transfer protein 2 isoform 2) (LTP2-2) (7 kDa lipid
transfer protein 2)
Length = 94
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 38/56 (67%)
Query: 35 LTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGI 90
L+ C AI GA P+ CC LRAQQ C CQ+A+DP Y YV SP+A++AV +C +
Sbjct: 35 LSPCMSAIMLGAAPSPGCCVQLRAQQPCLCQYARDPSYRSYVTSPSAQRAVKACNV 90
>Os11g0620300 Similar to Nonspecific lipid-transfer protein 2 (LTP 2)
Length = 110
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 35 LTVCTG-AIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALP 93
LT C G A+ GG P A CC+ LRAQ C C +A+ P YG Y+ SPNAR+ + CG+ +P
Sbjct: 49 LTPCAGPALFGGPVPPA-CCAQLRAQAACLCAYARSPNYGSYIRSPNARRLFAVCGLPMP 107
Query: 94 TC 95
C
Sbjct: 108 QC 109
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.133 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,507,456
Number of extensions: 72947
Number of successful extensions: 297
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 12
Length of query: 96
Length of database: 17,035,801
Length adjustment: 65
Effective length of query: 31
Effective length of database: 13,641,891
Effective search space: 422898621
Effective search space used: 422898621
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)