FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0691300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.88 (0.0377) R2 : 0.221
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.78 (0.158) R2dE : 0.238 R2E : 0.214
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.145 (0.0823) R2dN8 : 0.00753 R2N8 : -0.0164
σ : 0.701
deviance : 226.83
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 30.31
memory length : 181
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
202.73 0.669 3.87 -0.319 0.2 1.47 1.64 -2.18 0.0937 0.758 31.55 252 -- --
206.17 0.669 3.92 -0.674 0.148 1.48 1.4 -- 0.012 23.9 30.86 232 -- --
212.4 0.679 3.9 -0.626 0.214 1.39 -- -0.922 0.0287 2.93 31.01 232 -- --
213.02 0.68 3.92 -0.705 0.239 1.37 -- -- -0.00126 4.02 30.31 187 -- --
214.34 0.682 3.9 -0.603 -- 1.59 -- -0.609 0.0441 -- 31.16 187 -- --
233.25 0.716 3.97 -1.07 0.618 -- 1.16 -- -0.26 3.06 -- -- -- --
236.7 0.72 3.97 -1.09 0.648 -- -- -- -0.268 3.84 -- -- -- --
214.6 0.682 3.91 -0.708 -- 1.58 -- -- 0.02 -- 30.8 173 -- --
226.45 0.701 3.89 -- 0.1 1.69 -- -- 0.127 4.12 30.24 182 -- --
259.82 0.753 3.97 -1.07 -- -- -- -- -0.25 -- -- -- -- --
268.28 0.766 3.95 -- 0.627 -- -- -- -0.146 3.86 -- -- -- --
226.83 0.701 3.88 -- -- 1.78 -- -- 0.145 -- 30.31 181 -- --
289.91 0.795 3.95 -- -- -- -- -- -0.132 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 200.60 temperature 10 270 > th dose dependent rect. 7 23
6 201.29 temperature 30 270 < th dose dependent rect. 23 23
8 201.52 temperature 30 270 < th dose dependent rect. 14 22
10 201.67 temperature 15 270 > th dose dependent rect. 4 23
33 202.94 temperature 15 270 > th dose dependent rect. 19 23
37 203.11 temperature 30 270 < th dose dependent no NA NA
40 203.26 temperature 10 270 > th dose dependent no NA NA
66 204.13 temperature 30 720 < th dose dependent rect. 23 18
68 204.15 temperature 30 720 < th dose dependent rect. 21 19
73 204.24 temperature 15 270 > th dose dependent rect. 16 23
78 204.39 temperature 10 720 > th dose dependent rect. 22 16
91 204.63 temperature 15 270 > th dose dependent rect. 1 23
106 204.90 temperature 10 720 > th dose dependent rect. 22 18
115 205.04 temperature 30 270 < th dose dependent rect. 3 18
116 205.04 temperature 15 270 > th dose dependent rect. 22 23
164 205.43 temperature 10 720 > th dose dependent sin 5 NA
168 205.45 temperature 20 720 > th dose independent rect. 1 18
262 205.94 radiation 30 4320 < th dose independent rect. 16 16
278 206.00 temperature 30 720 < th dose dependent sin 6 NA
299 206.04 temperature 15 10 > th dose dependent rect. 22 23
312 206.10 temperature 10 270 > th dose dependent sin 2 NA
323 206.16 temperature 30 270 < th dose dependent rect. 8 23
415 206.57 temperature 30 270 < th dose dependent sin 2 NA
605 207.44 temperature 20 720 < th dose independent rect. 21 20
609 207.46 temperature 20 720 < th dose independent rect. 23 19
667 207.70 temperature 20 720 > th dose independent rect. 9 22
696 207.82 temperature 20 720 > th dose independent sin 4 NA
702 207.83 temperature 20 720 < th dose independent rect. 9 22
741 207.95 temperature 20 720 < th dose dependent rect. 18 12
823 208.16 temperature 20 720 > th dose independent rect. 4 23
856 208.24 temperature 30 30 < th dose dependent rect. 11 23
923 208.39 humidity 50 43200 > th dose independent rect. 8 1
996 208.51 radiation 30 4320 < th dose independent rect. 18 14