BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0691300 Os01g0691300|J075112P14
(112 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G66850.1 | chr1:24936985-24937293 FORWARD LENGTH=103 59 4e-10
AT3G18280.1 | chr3:6267102-6267392 FORWARD LENGTH=97 56 3e-09
AT1G48750.1 | chr1:18036019-18036303 FORWARD LENGTH=95 54 2e-08
AT1G43667.1 | chr1:16465170-16465466 REVERSE LENGTH=99 51 1e-07
AT5G38170.1 | chr5:15227717-15228028 FORWARD LENGTH=104 50 2e-07
AT5G38160.1 | chr5:15225836-15226147 FORWARD LENGTH=104 49 7e-07
AT2G14846.1 | chr2:6382430-6382729 FORWARD LENGTH=100 47 2e-06
AT5G38195.1 | chr5:15246991-15247278 FORWARD LENGTH=96 46 4e-06
AT1G73780.1 | chr1:27743872-27744168 FORWARD LENGTH=99 46 5e-06
>AT1G66850.1 | chr1:24936985-24937293 FORWARD LENGTH=103
Length = 102
Score = 59.3 bits (142), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 44 CDLMQLSPCVSAFSGVGQGSPSSACCSKLKAQGSSCLCLYKDDPKVKRIVSSNRTKRVFT 103
CD QL PC++A +G GQ PS ACC+KL Q SCLC + +P + +SS ++V
Sbjct: 37 CDARQLQPCLAAITGGGQ--PSGACCAKLTEQ-QSCLCGFAKNPAFAQYISSPNARKVLL 93
Query: 104 ACKVPAPNC 112
AC V P C
Sbjct: 94 ACNVAYPTC 102
>AT3G18280.1 | chr3:6267102-6267392 FORWARD LENGTH=97
Length = 96
Score = 56.2 bits (134), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 44 CDLMQLSPCVSAFSGVGQGSPSSACCSKLKAQGSSCLCLYKDDPKVKRIVSSNRTKRVFT 103
C MQLSPC +A + PS+ CC+KLK Q CLC Y +P ++R VS+ ++V
Sbjct: 31 CSPMQLSPCATAITS--SSPPSALCCAKLKEQ-RPCLCGYMRNPSLRRFVSTPNARKVSK 87
Query: 104 ACKVPAPNC 112
+CK+P P C
Sbjct: 88 SCKLPIPRC 96
>AT1G48750.1 | chr1:18036019-18036303 FORWARD LENGTH=95
Length = 94
Score = 53.5 bits (127), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 44 CDLMQLSPCVSAFSGVGQGSPSSACCSKLKAQGSSCLCLYKDDPKVKRIVSSNRTKRVFT 103
C MQL+ C +A + PS ACC+KL+ Q CLC Y +P +++ VSS ++V
Sbjct: 29 CSPMQLASCAAAMTS--SSPPSEACCTKLREQ-QPCLCGYMRNPTLRQYVSSPNARKVSN 85
Query: 104 ACKVPAPNC 112
+CK+P+P+C
Sbjct: 86 SCKIPSPSC 94
>AT1G43667.1 | chr1:16465170-16465466 REVERSE LENGTH=99
Length = 98
Score = 50.8 bits (120), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 44 CDLMQLSPCVSAFSGVGQGSPSSACCSKLKAQGSSCLCLYKDDPKVKRIVSSNRTKRVFT 103
C + +L PC+ S + PS+ CC KLK Q +SC C Y +P+ + +++ K++
Sbjct: 35 CTVTELQPCLP--SVIDGSQPSTQCCEKLKEQ-NSCFCDYLQNPQFSQYITA--AKQILA 89
Query: 104 ACKVPAPNC 112
ACK+P PNC
Sbjct: 90 ACKIPYPNC 98
>AT5G38170.1 | chr5:15227717-15228028 FORWARD LENGTH=104
Length = 103
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 44 CDLMQLSPCVS-AFSGVGQGSPSSACCSKLKAQGSSCLCLYKDDPKVKRIVSSNRTKRVF 102
CD +QLS C + +GV PS+ CC KLK Q C C Y DP+ + V S K+
Sbjct: 38 CDAVQLSSCATPMLTGV---PPSTECCGKLKEQ-QPCFCTYIKDPRYSQYVGSANAKKTL 93
Query: 103 TACKVPAPNC 112
C VP P C
Sbjct: 94 ATCGVPYPTC 103
>AT5G38160.1 | chr5:15225836-15226147 FORWARD LENGTH=104
Length = 103
Score = 48.5 bits (114), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 44 CDLMQLSPCVSAFSGVGQGSPSSACCSKLKAQGSSCLCLYKDDPKVKRIVSSNRTKRVFT 103
CD QLS CV+A S PS+ CC KLK + +CLC Y +P V+S ++
Sbjct: 38 CDATQLSSCVTAVST--GAPPSTDCCGKLK-EHETCLCTYIQNPLYSSYVTSPNARKTLA 94
Query: 104 ACKVPAPNC 112
AC V P C
Sbjct: 95 ACDVAYPTC 103
>AT2G14846.1 | chr2:6382430-6382729 FORWARD LENGTH=100
Length = 99
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 58 GVGQGS-PSSACCSKLKAQGSSCLCLYKDDPKVKRIVSSNRTKRVFTACKVPAPNC 112
V GS PS CC KLK Q SCLC Y P + VSS + ++V TAC +P P C
Sbjct: 45 AVEAGSQPSVQCCGKLKEQ-LSCLCGYLKIPSFTQYVSSGKAQKVLTACAIPIPKC 99
>AT5G38195.1 | chr5:15246991-15247278 FORWARD LENGTH=96
Length = 95
Score = 45.8 bits (107), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 48 QLSPCVSAFSGVGQGSPSSACCSKLKAQGSSCLCLYKDDPKVKRIVSSNRTKRVFTACKV 107
+L PC+ A + GQ P+ CC KL Q CLC Y ++P VSS ++V C +
Sbjct: 34 ELMPCLPAMTTGGQ--PTKDCCDKLIEQ-KECLCGYINNPLYSTFVSSPVARKVLEVCNI 90
Query: 108 PAPNC 112
P P+C
Sbjct: 91 PYPSC 95
>AT1G73780.1 | chr1:27743872-27744168 FORWARD LENGTH=99
Length = 98
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 44 CDLMQLSPCVSAFSGVGQGS-PSSACCSKLKAQGSSCLCLYKDDPKVKRIVSSNRTKRVF 102
C+ QLSPC+ + +GS PS CCSK+K Q C+C Y +P K ++S K +
Sbjct: 33 CNPAQLSPCLET---IMKGSEPSDLCCSKVKEQ-QHCICQYLKNPNFKSFLNSPNAKIIA 88
Query: 103 TACKVPAPNC 112
T C P P C
Sbjct: 89 TDCHCPYPKC 98
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.130 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,764,729
Number of extensions: 55891
Number of successful extensions: 216
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 12
Length of query: 112
Length of database: 11,106,569
Length adjustment: 81
Effective length of query: 31
Effective length of database: 8,885,873
Effective search space: 275462063
Effective search space used: 275462063
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)