BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0549800 Os05g0549800|Os05g0549800
(394 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0549800 Transcriptional factor B3 family protein 544 e-155
Os01g0693400 Transcriptional factor B3 family protein 385 e-107
Os01g0140700 269 2e-72
Os01g0141000 Similar to RAV-like protein 251 9e-67
Os02g0683500 Similar to DNA-binding protein RAV1 153 3e-37
Os04g0581400 Transcriptional factor B3 family protein 152 4e-37
Os03g0120900 Similar to AP2 domain containing protein RAP2.... 150 2e-36
Os10g0537100 146 2e-35
Os11g0156000 Similar to AP2 domain containing protein RAP2.... 133 2e-31
Os08g0157700 129 5e-30
Os07g0273700 Transcriptional factor B3 family protein 96 5e-20
Os02g0455800 Transcriptional factor B3 family protein 68 2e-11
>Os05g0549800 Transcriptional factor B3 family protein
Length = 394
Score = 544 bits (1402), Expect = e-155, Method: Compositional matrix adjust.
Identities = 281/394 (71%), Positives = 281/394 (71%)
Query: 1 MDSTSCLLDDXXXXXXXXXXXXXXXXXXXLQRVGSGASAVMDAAEPXXXXXXXXXXXXXX 60
MDSTSCLLDD LQRVGSGASAVMDAAEP
Sbjct: 1 MDSTSCLLDDASSGASTGKKAAAAAASKALQRVGSGASAVMDAAEPGAEADSGGERRGGG 60
Query: 61 XXKLPSSKYKGVVPQPNGRWGAQIYERHQRVWLGTFTGEXXXXXXXXXXXQRFRGRDAVT 120
KLPSSKYKGVVPQPNGRWGAQIYERHQRVWLGTFTGE QRFRGRDAVT
Sbjct: 61 GGKLPSSKYKGVVPQPNGRWGAQIYERHQRVWLGTFTGEAEAARAYDVAAQRFRGRDAVT 120
Query: 121 NFRPLAESDPEAAVELRFLASRSKAEVVDMLRKHTYLEELTQNKRAFXXXXXXXXXXXXX 180
NFRPLAESDPEAAVELRFLASRSKAEVVDMLRKHTYLEELTQNKRAF
Sbjct: 121 NFRPLAESDPEAAVELRFLASRSKAEVVDMLRKHTYLEELTQNKRAFAAISPPPPKHPAS 180
Query: 181 XXXXXXXXREHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLXXXXXXSSVXXXXXXXX 240
REHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQL SSV
Sbjct: 181 SPTSSSAAREHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPPPTTTSSVAAAADAAA 240
Query: 241 XXXXCKGVLLNFEDAAGKVWKFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRAA 300
CKGVLLNFEDAAGKVWKFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRAA
Sbjct: 241 GGGDCKGVLLNFEDAAGKVWKFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRAA 300
Query: 301 GKNAQLFIDCKVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRLFGVDLLTAAAPELQDA 360
GKNAQLFIDCKVR IRLFGVDLLTAAAPELQDA
Sbjct: 301 GKNAQLFIDCKVRAKPTTAAAAAAFLSAVAAAAAPPPAVKAIRLFGVDLLTAAAPELQDA 360
Query: 361 GGAAMTKSKRAMDAMAESQAHVVFKKQCIELALT 394
GGAAMTKSKRAMDAMAESQAHVVFKKQCIELALT
Sbjct: 361 GGAAMTKSKRAMDAMAESQAHVVFKKQCIELALT 394
>Os01g0693400 Transcriptional factor B3 family protein
Length = 393
Score = 385 bits (988), Expect = e-107, Method: Compositional matrix adjust.
Identities = 229/420 (54%), Positives = 247/420 (58%), Gaps = 55/420 (13%)
Query: 1 MDSTSCLLDDXXXXXXXX----XXXXXXXXXXXLQRVGSGASAVMDAAEPXXXXXXXXXX 56
MDS+SCL+DD L+R+GSGASAV+DAAEP
Sbjct: 1 MDSSSCLVDDTNSGGSSTDKLRALAAAAAETAPLERMGSGASAVVDAAEPGAEADSGSGG 60
Query: 57 XXXXXX---------KLPSSKYKGVVPQPNGRWGAQIYERHQRVWLGTFTGEXXXXXXXX 107
KLPSSK+KGVVPQPNGRWGAQIYERHQRVWLGTF GE
Sbjct: 61 RVCGGGGGGAGGAGGKLPSSKFKGVVPQPNGRWGAQIYERHQRVWLGTFAGEDDAARAYD 120
Query: 108 XXXQRFRGRDAVTNFRPLAESDPEAAVELRFLASRSKAEVVDMLRKHTYLEELTQNKRAF 167
QRFRGRDAVTNFRPLAE+DP+AA ELRFLA+RSKAEVVDMLRKHTY +EL Q+KR F
Sbjct: 121 VAAQRFRGRDAVTNFRPLAEADPDAAAELRFLATRSKAEVVDMLRKHTYFDELAQSKRTF 180
Query: 168 XXXXXXXXXXXXXXXX----------XXXXXREHLFDKTVTPSDVGKLNRLVIPKQHAEK 217
R+HLFDKTVTPSDVGKLNRLVIPKQHAEK
Sbjct: 181 AASTPSAATTTASLSNGHLSSPRSPFAPAAARDHLFDKTVTPSDVGKLNRLVIPKQHAEK 240
Query: 218 HFPLQLXXXXXXSSVXXXXXXXXXXXXCKGVLLNFEDAAGKVWKFRYSYWNSSQSYVLTK 277
HFPLQL S KGVLLNFEDAAGKVW+FRYSYWNSSQSYVLTK
Sbjct: 241 HFPLQLPSAGGES---------------KGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTK 285
Query: 278 GWSRFVKEKGLHAGDAVGFYR---AAGKNAQLFIDCKVRXXXXXXXXXXXXXXXXXXXXX 334
GWSRFVKEKGLHAGD VGFYR +AG + +LFIDCK+
Sbjct: 286 GWSRFVKEKGLHAGDVVGFYRSAASAGDDGKLFIDCKL-------VRSTGAALASPADQP 338
Query: 335 XXXXXXXIRLFGVDLLTAAAPELQDAGGAAMTKSKRAMD-AMAESQAHVVFKKQCIELAL 393
+RLFGVDLLTA AP Q AG KRA D A FKKQCIELAL
Sbjct: 339 APSPVKAVRLFGVDLLTAPAPVEQMAG------CKRARDLAATTPPQAAAFKKQCIELAL 392
>Os01g0140700
Length = 317
Score = 269 bits (688), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 146/250 (58%), Positives = 158/250 (63%), Gaps = 29/250 (11%)
Query: 65 PSSKYKGVVPQPNGRWGAQIYERHQRVWLGTFTGEXXXXXXXXXXXQRFRGRDAVTNFRP 124
PSS+YKGVVPQPNGRWGAQIYERH RVWLGTF E RFRGRDAVTN P
Sbjct: 63 PSSRYKGVVPQPNGRWGAQIYERHARVWLGTFPDEEAAARAYDVAALRFRGRDAVTNRAP 122
Query: 125 LAESDPEAAVELRFLASRSKAEVVDMLRKHTYLEELTQNKRAFXXXXXXXXXXXXXXXXX 184
AE +A EL FLA+ SKAEVVDMLRKHTY +EL Q R
Sbjct: 123 AAEG--ASAGELAFLAAHSKAEVVDMLRKHTYDDELQQGLR-----------RGSRAQPT 169
Query: 185 XXXXREHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLXXXXXXSSVXXXXXXXXXXXX 244
RE LF+K VTPSDVGKLNRLV+PKQ AE+HFP L ++
Sbjct: 170 PRWAREPLFEKAVTPSDVGKLNRLVVPKQQAERHFPFPLRRHSSDAA------------- 216
Query: 245 CKGVLLNFEDAAGKVWKFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRAA---G 301
KGVLLNFED GKVW+FRYSYWNSSQSYVLTKGWSRFV+EKGL GD V F R+A G
Sbjct: 217 GKGVLLNFEDGDGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRPGDTVAFSRSAAAWG 276
Query: 302 KNAQLFIDCK 311
L IDCK
Sbjct: 277 TEKHLLIDCK 286
>Os01g0141000 Similar to RAV-like protein
Length = 365
Score = 251 bits (640), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 156/323 (48%), Positives = 179/323 (55%), Gaps = 39/323 (12%)
Query: 68 KYKGVVPQPNGRWGAQIYERHQRVWLGTFTGEXXXXXXXXXXXQRFRGRDAVTNFRPLAE 127
+YKGVVPQPNGRWGAQIYERH RVWLGTF E R+RGRDA TNF
Sbjct: 68 RYKGVVPQPNGRWGAQIYERHARVWLGTFPDEEAAARAYDVAALRYRGRDAATNF----P 123
Query: 128 SDPEAAVELRFLASRSKAEVVDMLRKHTYLEELTQNKRAFXXXXXXXXXXXXXXXXXXXX 187
+A EL FLA+ SKAE+VDMLRKHTY +EL Q R
Sbjct: 124 GAAASAAELAFLAAHSKAEIVDMLRKHTYADELRQGLR-------RGRGMGARAQPTPSW 176
Query: 188 XREHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLXXXXXXSSVXXXXXXXXXXXXCKG 247
RE LF+K VTPSDVGKLNRLV+PKQHAEKHFPL+ +S KG
Sbjct: 177 AREPLFEKAVTPSDVGKLNRLVVPKQHAEKHFPLRRAASSDSASAAATG---------KG 227
Query: 248 VLLNFEDAAGKVWKFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRAA-GKNAQL 306
VLLNFED GKVW+FRYSYWNSSQSYVLTKGWSRFV+EKGL AGD + F R+A G + L
Sbjct: 228 VLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSRSAYGPDKLL 287
Query: 307 FIDCKVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRLFGVDLLTAAAPELQDAGGAAMT 366
FIDCK +RLFGVD+ AGG
Sbjct: 288 FIDCK----KNNAAAATTTCAGDERPTTSGAEPRVVRLFGVDI----------AGGDCRK 333
Query: 367 KSKRAMDAMAESQAHVVFKKQCI 389
+ + A+ Q + K+QC+
Sbjct: 334 RER----AVEMGQEVFLLKRQCV 352
>Os02g0683500 Similar to DNA-binding protein RAV1
Length = 412
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/128 (61%), Positives = 87/128 (67%), Gaps = 21/128 (16%)
Query: 189 REHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLXXXXXXSSVXXXXXXXXXXXXCKGV 248
+EH+FDK VTPSDVGKLNRLVIPKQ+AEK+FPL KG+
Sbjct: 92 KEHMFDKVVTPSDVGKLNRLVIPKQYAEKYFPLDAAANE------------------KGL 133
Query: 249 LLNFEDAAGKVWKFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRAAGKNA---Q 305
LLNFED AGK W+FRYSYWNSSQSYV+TKGWSRFVKEK L AGD V F R G A +
Sbjct: 134 LLNFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSRGIGDEAARHR 193
Query: 306 LFIDCKVR 313
LFID K R
Sbjct: 194 LFIDWKRR 201
>Os04g0581400 Transcriptional factor B3 family protein
Length = 316
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 77/127 (60%), Positives = 87/127 (68%), Gaps = 20/127 (15%)
Query: 189 REHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLXXXXXXSSVXXXXXXXXXXXXCKGV 248
+EH+FDK VTPSDVGKLNRLVIPKQHAEK+FPL KG+
Sbjct: 106 KEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSAANE------------------KGL 147
Query: 249 LLNFEDAAGKVWKFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRAAGKNA--QL 306
LL+FED GK+W+FRYSYWNSSQSYV+TKGWSRFVKEK L AGD V F R A + +L
Sbjct: 148 LLSFEDRTGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRGAAEATRDRL 207
Query: 307 FIDCKVR 313
FID K R
Sbjct: 208 FIDWKRR 214
>Os03g0120900 Similar to AP2 domain containing protein RAP2.8 (Fragment)
Length = 311
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/127 (60%), Positives = 87/127 (68%), Gaps = 20/127 (15%)
Query: 189 REHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLXXXXXXSSVXXXXXXXXXXXXCKGV 248
+EH+FDK VTPSDVGKLNRLVIPKQHAEK+FPL KG+
Sbjct: 33 KEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDAASNE------------------KGL 74
Query: 249 LLNFEDAAGKVWKFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRAAGKNA--QL 306
LL+FED GK W+FRYSYWNSSQSYV+TKGWSRFVKEK L AGD V F R G+ A +L
Sbjct: 75 LLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGVGEAARGRL 134
Query: 307 FIDCKVR 313
FID + R
Sbjct: 135 FIDWRRR 141
>Os10g0537100
Length = 312
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/127 (58%), Positives = 86/127 (67%), Gaps = 7/127 (5%)
Query: 189 REHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLXXXXXXSSVXXXXXXXXXXXXCKGV 248
+EH+F+K VTPSDVGKLNRLVIPKQHAE++FPL KG+
Sbjct: 31 KEHMFEKVVTPSDVGKLNRLVIPKQHAERYFPLDAAAGAGGGGGGGGGGGGG-----KGL 85
Query: 249 LLNFEDAAGKVWKFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRAAGKNA--QL 306
+L+FED GK W+FRYSYWNSSQSYV+TKGWSRFVKEK L AGD V F R G A +L
Sbjct: 86 VLSFEDRTGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRLGAGDTVSFGRGLGDAARGRL 145
Query: 307 FIDCKVR 313
FID + R
Sbjct: 146 FIDFRRR 152
>Os11g0156000 Similar to AP2 domain containing protein RAP2.8 (Fragment)
Length = 279
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/125 (55%), Positives = 81/125 (64%), Gaps = 20/125 (16%)
Query: 192 LFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLXXXXXXSSVXXXXXXXXXXXXCKGVLLN 251
+F+K +TPSDVGKLNRLVIPKQHAE++FPL KG++L+
Sbjct: 37 MFEKPLTPSDVGKLNRLVIPKQHAERYFPLGAGDAAD-----------------KGLILS 79
Query: 252 FEDAAGKVWKFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRAAGK---NAQLFI 308
FED AG W+FRYSYW SSQSYVLTKGWSR+VKEK L AGD V F R G +LFI
Sbjct: 80 FEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGSFGVGDRLFI 139
Query: 309 DCKVR 313
C+ R
Sbjct: 140 GCRRR 144
>Os08g0157700
Length = 287
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/123 (54%), Positives = 76/123 (61%), Gaps = 24/123 (19%)
Query: 189 REHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLXXXXXXSSVXXXXXXXXXXXXCKGV 248
REH+FDK VTPSDVGKLNRLV+PKQHAE+ FP G
Sbjct: 67 REHMFDKVVTPSDVGKLNRLVVPKQHAERFFP----------------------AAAAGT 104
Query: 249 LLNFEDAAGKVWKFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRAAGKNAQLFI 308
L FED AG W+FRYSYW SSQSYV+TKGWSRFV+ L AGD V F RAA + + FI
Sbjct: 105 QLCFEDRAGTPWRFRYSYWGSSQSYVMTKGWSRFVRAARLSAGDTVSFSRAA--DGRYFI 162
Query: 309 DCK 311
D +
Sbjct: 163 DYR 165
>Os07g0273700 Transcriptional factor B3 family protein
Length = 1450
Score = 95.9 bits (237), Expect = 5e-20, Method: Composition-based stats.
Identities = 55/127 (43%), Positives = 67/127 (52%), Gaps = 25/127 (19%)
Query: 189 REHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLXXXXXXSSVXXXXXXXXXXXXCKGV 248
+EH+FDK VTPSDVG L RLVIP QHAE +FP + +GV
Sbjct: 70 KEHIFDKVVTPSDVGNLGRLVIPWQHAECYFPRDVPANER-----------------EGV 112
Query: 249 LLNFEDAAGKVWKFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRAAGKNA--QL 306
+L FED AG W+F Y + LT GWS F ++ L AGD V FYR A + +L
Sbjct: 113 VLRFEDDAGNSWRFLY------RGSSLTLGWSHFFRKNRLDAGDMVSFYRGASEATRDRL 166
Query: 307 FIDCKVR 313
FI K R
Sbjct: 167 FIHSKRR 173
>Os02g0455800 Transcriptional factor B3 family protein
Length = 267
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 25/126 (19%)
Query: 190 EHLFDKTVTPSDV-GKLNRLVIPKQHAEKHFPLQLXXXXXXSSVXXXXXXXXXXXXCKGV 248
E+LF+K + PSD+ L IP++H K F + L S
Sbjct: 26 EYLFEKFLMPSDLCSNTEWLGIPEEHVRK-FGMMLEDRDGYS------------------ 66
Query: 249 LLNFEDAA--GKVWKFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRAAGKNAQL 306
++ F+D GK+W FRY W S+ + LTKGW FV+EKGL AGD + F+R + +L
Sbjct: 67 VIFFQDGVVPGKLWCFRY--WKSNGVHGLTKGWRCFVREKGLKAGDTISFFRGSA-CGRL 123
Query: 307 FIDCKV 312
FI C++
Sbjct: 124 FICCRL 129
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,172,934
Number of extensions: 265503
Number of successful extensions: 792
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 775
Number of HSP's successfully gapped: 14
Length of query: 394
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 291
Effective length of database: 11,657,759
Effective search space: 3392407869
Effective search space used: 3392407869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)