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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0455800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transcriptional factor B3 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.79 (0.0215) R2 : 0.238
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.85 (0.406) R2dE : 0.238 R2E : 0.238
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0169 (0.0452) R2dN8 : 0.000302 R2N8 : -0.000142
σ : 0.403
deviance : 74.98
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_____
C
peak time of C : --
E
wheather : wind
threshold : 0.1762
memory length : 77
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.07
open length of G : 0.774

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
74.56 0.406 2.79 -0.0869 0.0532 3.57 0.257 -13.7 0.011 16.3 0.6003 94 8 0.897
75.19 0.404 2.79 -0.0749 0.0581 4.73 0.254 -- 0.009 16.6 0.6015 93 8.02 0.891
74.67 0.402 2.79 -0.0785 0.0681 3.67 -- -12.7 0.0137 18.3 0.4599 96 8.13 0.75
74.67 0.402 2.79 -0.0506 0.0672 4.86 -- -- 0.012 18.4 0.2032 76 8.08 0.767
74.91 0.403 2.79 -0.0865 -- 3.55 -- -13.9 0.011 -- 0.484 92 8.07 0.832
97.93 0.464 2.79 -0.0766 0.0492 -- 0.267 -- -0.00512 15.7 -- -- -- --
98.14 0.464 2.79 -0.0724 0.0519 -- -- -- -0.00355 16.2 -- -- -- --
74.91 0.403 2.79 -0.0528 -- 4.84 -- -- 0.011 -- 0.1944 77 8.09 0.773
74.73 0.403 2.79 -- 0.0695 4.87 -- -- 0.0182 18.4 0.2148 78 8.1 0.758
98.29 0.463 2.79 -0.0745 -- -- -- -- -0.00493 -- -- -- -- --
98.28 0.464 2.79 -- 0.0533 -- -- -- 0.00452 16.2 -- -- -- --
74.98 0.403 2.79 -- -- 4.85 -- -- 0.0169 -- 0.1762 77 8.07 0.774
98.43 0.463 2.79 -- -- -- -- -- 0.00334 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 74.94 wind 1.0 90 < th dose dependent rect. 8 1
2 75.85 humidity 80.0 30 > th dose dependent rect. 9 1
8 77.31 wind 1.0 90 < th dose independent rect. 8 1
11 78.71 humidity 80.0 10 > th dose independent rect. 10 1
22 85.04 radiation 10.0 90 < th dose dependent rect. 8 2
26 86.22 humidity 90.0 90 > th dose dependent rect. 20 1
31 87.22 atmosphere 1005.0 90 < th dose independent rect. 20 1
78 89.51 humidity 90.0 270 > th dose independent rect. 15 1
80 89.51 humidity 90.0 270 > th dose dependent rect. 14 1
102 90.18 radiation 10.0 90 < th dose independent rect. 8 2
105 90.23 radiation 10.0 270 < th dose dependent rect. 14 1
140 90.84 radiation 10.0 270 < th dose dependent rect. 13 3
158 91.09 radiation 1.0 10 < th dose independent rect. 13 3
171 91.11 radiation 1.0 10 < th dose independent rect. 15 1
212 91.23 radiation 10.0 90 < th dose dependent rect. 8 9
224 91.33 radiation 10.0 270 < th dose dependent rect. 9 7
232 91.43 humidity 90.0 270 > th dose dependent rect. 12 4
241 91.52 atmosphere 1005.0 90 < th dose independent rect. 8 1
242 91.52 temperature 25.0 270 < th dose dependent rect. 14 1
246 91.55 humidity 90.0 90 > th dose independent rect. 21 1
249 91.57 humidity 90.0 270 > th dose independent rect. 12 4
257 91.62 humidity 90.0 10 > th dose independent rect. 22 1
298 91.79 radiation 1.0 10 < th dose dependent rect. 15 1
324 91.88 radiation 10.0 270 < th dose dependent rect. 5 11
402 92.29 temperature 25.0 270 < th dose dependent rect. 13 3
415 92.35 humidity 70.0 90 < th dose dependent rect. 19 1
431 92.37 radiation 1.0 720 < th dose independent rect. 10 6
444 92.42 atmosphere 1005.0 10 < th dose independent rect. 9 1
494 92.58 temperature 25.0 90 < th dose independent rect. 15 2
506 92.65 humidity 80.0 10 < th dose independent rect. 5 1
514 92.65 humidity 80.0 10 < th dose dependent rect. 5 1
552 92.75 atmosphere 1015.0 10 < th dose dependent rect. 8 2
567 92.82 humidity 70.0 90 < th dose independent rect. 19 1
585 92.85 humidity 50.0 10 > th dose dependent rect. 20 15
625 93.00 humidity 50.0 90 > th dose dependent rect. 20 14
630 93.02 atmosphere 1005.0 270 > th dose dependent rect. 14 2
657 93.10 temperature 20.0 90 > th dose independent rect. 8 2
703 93.22 humidity 60.0 90 > th dose independent rect. 8 2
710 93.24 temperature 25.0 10 < th dose independent rect. 10 1
726 93.26 humidity 60.0 90 > th dose independent rect. 20 14
733 93.28 radiation 10.0 270 < th dose dependent sin 23 NA
734 93.28 wind 3.0 10 > th dose dependent rect. 6 1
745 93.31 radiation 1.0 10 < th dose independent rect. 6 11
788 93.40 wind 7.0 90 < th dose independent rect. 20 14
806 93.43 wind 7.0 10 < th dose independent rect. 20 15
817 93.45 wind 3.0 30 > th dose independent rect. 20 2
841 93.49 atmosphere 1000.0 90 > th dose independent rect. 8 2
855 93.51 atmosphere 1010.0 30 < th dose dependent rect. 20 2
860 93.52 radiation 40.0 90 < th dose independent rect. 20 14
861 93.52 temperature 10.0 90 > th dose dependent rect. 8 2
866 93.53 precipitation 0.1 90 < th dose independent rect. 20 14
872 93.53 precipitation 0.1 90 < th dose dependent rect. 20 14
876 93.54 temperature 10.0 90 > th dose independent rect. 10 10
877 93.54 atmosphere 1015.0 90 < th dose independent rect. 10 10
878 93.54 temperature 10.0 90 > th dose independent rect. 20 14
880 93.54 atmosphere 995.0 90 > th dose independent rect. 20 14
881 93.54 radiation 40.0 10 < th dose independent rect. 20 15
895 93.57 radiation 1.0 10 < th dose dependent rect. 6 11
901 93.59 wind 1.0 90 > th dose independent rect. 10 10
902 93.59 wind 9.0 90 < th dose independent rect. 10 10
915 93.61 precipitation 0.1 90 < th dose independent rect. 10 10
919 93.61 precipitation 0.1 90 < th dose dependent rect. 10 10
924 93.62 humidity 70.0 10 > th dose dependent rect. 16 1
956 93.68 radiation 1.0 90 > th dose independent rect. 8 2
970 93.69 radiation 10.0 10 < th dose independent rect. 9 15
983 93.71 wind 3.0 10 > th dose independent rect. 5 2
984 93.71 wind 1.0 10 > th dose independent rect. 11 9
986 93.71 humidity 50.0 1440 > th dose independent rect. 21 14
994 93.72 wind 9.0 10 < th dose independent rect. 11 9
995 93.72 temperature 10.0 1440 > th dose independent rect. 11 10
998 93.72 atmosphere 995.0 90 > th dose independent rect. 10 10
999 93.72 temperature 10.0 1440 > th dose independent rect. 21 14