BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0498700 Os05g0498700|AK065975
(314 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0498700 Similar to Gda-1 protein 601 e-172
Os01g0550300 Similar to Gda-1 protein 275 3e-74
Os05g0594100 Similar to GDA2 protein 254 6e-68
Os01g0165200 STAT protein family protein 114 1e-25
Os05g0164900 Galactose oxidase, central domain containing p... 112 4e-25
Os09g0563700 Conserved hypothetical protein 92 4e-19
Os02g0745600 Conserved hypothetical protein 75 5e-14
Os06g0227200 Conserved hypothetical protein 72 5e-13
Os11g0525700 Conserved hypothetical protein 69 4e-12
>Os05g0498700 Similar to Gda-1 protein
Length = 314
Score = 601 bits (1549), Expect = e-172, Method: Compositional matrix adjust.
Identities = 292/314 (92%), Positives = 292/314 (92%)
Query: 1 MDNLWHLGDEFRGQSKVVEDRQWSLMTSKLAEINKSKAERTNELDYARMNTIPDVKQWDK 60
MDNLWHLGDEFRGQSKVVEDRQWSLMTSKLAEINKSKAERTNELDYARMNTIPDVKQWDK
Sbjct: 1 MDNLWHLGDEFRGQSKVVEDRQWSLMTSKLAEINKSKAERTNELDYARMNTIPDVKQWDK 60
Query: 61 VSYHQDESKMDHLNLGLMNLDLKMNDIRMNDAAMKNPFRGMAYNMNQLYPKGGNGNVNSF 120
VSYHQDESKMDHLNLGLMNLDLKMNDIRMNDAAMKNPFRGMAYNMNQLYPKGGNGNVNSF
Sbjct: 61 VSYHQDESKMDHLNLGLMNLDLKMNDIRMNDAAMKNPFRGMAYNMNQLYPKGGNGNVNSF 120
Query: 121 KMNVGVNKYLHSPNGKDVXXXXXXXXXXXXXXXXXXXXXXAVDKRFKTLPTSEMLPRNEV 180
KMNVGVNKYLHSPNGKDV AVDKRFKTLPTSEMLPRNEV
Sbjct: 121 KMNVGVNKYLHSPNGKDVNGKNSGANSNGSNSSGNNSSNSAVDKRFKTLPTSEMLPRNEV 180
Query: 181 LGGYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLPLFLYNYTTHQLHGVFEASSF 240
LGGYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLPLFLYNYTTHQLHGVFEASSF
Sbjct: 181 LGGYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLPLFLYNYTTHQLHGVFEASSF 240
Query: 241 GGSNIDPTAWEDKKCKGESRFPAQVRIRIRKLCKPLEEDAFRPVLHHYDGPKFRLELSIA 300
GGSNIDPTAWEDKKCKGESRFPAQVRIRIRKLCKPLEEDAFRPVLHHYDGPKFRLELSIA
Sbjct: 241 GGSNIDPTAWEDKKCKGESRFPAQVRIRIRKLCKPLEEDAFRPVLHHYDGPKFRLELSIA 300
Query: 301 ETLSLLDLCEKEGV 314
ETLSLLDLCEKEGV
Sbjct: 301 ETLSLLDLCEKEGV 314
>Os01g0550300 Similar to Gda-1 protein
Length = 328
Score = 275 bits (704), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 122/148 (82%), Positives = 137/148 (92%)
Query: 161 AVDKRFKTLPTSEMLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLP 220
A DKRFKTLP SE LPR+E +GGYIFVCNNDTM+E+LKRQLFGLP+RYRDSVRAI PGLP
Sbjct: 174 ASDKRFKTLPASEALPRDEAIGGYIFVCNNDTMEENLKRQLFGLPSRYRDSVRAIRPGLP 233
Query: 221 LFLYNYTTHQLHGVFEASSFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKLCKPLEEDA 280
LFLYNY+THQLHG+FEA+SFGG+NIDPTAWEDKKC GESRFPAQV++ RK+ PLEEDA
Sbjct: 234 LFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVKVATRKIYDPLEEDA 293
Query: 281 FRPVLHHYDGPKFRLELSIAETLSLLDL 308
FRP+LHHYDGPKFRLELS+AE LSLLD+
Sbjct: 294 FRPILHHYDGPKFRLELSVAEALSLLDI 321
>Os05g0594100 Similar to GDA2 protein
Length = 277
Score = 254 bits (649), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 113/141 (80%), Positives = 129/141 (91%), Gaps = 1/141 (0%)
Query: 169 LPTSEMLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLPLFLYNYTT 228
LP SE +P+ E +GGYIFVCNN+TM+E+LKRQLFGLP+RYRDSVRAI PGLPLFLYNY+T
Sbjct: 130 LPASESVPKEEAIGGYIFVCNNETMEENLKRQLFGLPSRYRDSVRAIRPGLPLFLYNYST 189
Query: 229 HQLHGVFEASSFGGSNIDPTAWEDKKCK-GESRFPAQVRIRIRKLCKPLEEDAFRPVLHH 287
HQLHG+FEA+SFGGSNIDP AWED KC GESRFPAQVR+ RK+C+PLEEDAFRPVLHH
Sbjct: 190 HQLHGIFEATSFGGSNIDPGAWEDSKCPGGESRFPAQVRVATRKICEPLEEDAFRPVLHH 249
Query: 288 YDGPKFRLELSIAETLSLLDL 308
YDGPKFRLEL++AE LSLLD+
Sbjct: 250 YDGPKFRLELTVAEALSLLDI 270
>Os01g0165200 STAT protein family protein
Length = 700
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 86/157 (54%), Gaps = 17/157 (10%)
Query: 162 VDKRFKTLPTSEMLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLPL 221
+ F+ LP E LGG +F CNN+T E +QLFGLP R V+ + PGLPL
Sbjct: 9 TENEFRELPEKE-------LGGVVFCCNNNTFDECFTKQLFGLPQRNILYVKNVKPGLPL 61
Query: 222 FLYNYTTHQLHGVFEASSFGGSNIDPTAW-----EDKKCKGESR-FPAQVRIRIRKLCKP 275
FL+NY+ QLHG+F+A+S G NID AW D K ++ FPAQVR R C P
Sbjct: 62 FLFNYSNRQLHGIFKATSTGQLNIDRFAWMSEQSNDAKTNAKTTPFPAQVRFSTRTECPP 121
Query: 276 LEEDAFRPVL---HHYDGPK-FRLELSIAETLSLLDL 308
L E ++ V+ + D P FR EL +T L+ L
Sbjct: 122 LPESKYKSVIINNYRKDKPSHFRFELDHRQTRDLISL 158
>Os05g0164900 Galactose oxidase, central domain containing protein
Length = 1049
Score = 112 bits (280), Expect = 4e-25, Method: Composition-based stats.
Identities = 61/132 (46%), Positives = 82/132 (62%), Gaps = 3/132 (2%)
Query: 177 RNEVLGGYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLPLFLYNYTTHQLHGVFE 236
R LGG IF C ++T++E ++QLFGLP+ + VR + PGLPLFL+NY+ +LHG+FE
Sbjct: 18 RENQLGGVIFGCKHNTIEECFEKQLFGLPSVHYSYVRNVKPGLPLFLFNYSDRKLHGIFE 77
Query: 237 ASSFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKLCKPLEEDAFRPVL--HHYDGPKFR 294
A+S G IDP AW S FPAQVRI + PL E FR VL ++Y+ F
Sbjct: 78 AASPGQMCIDPYAWSHDGSLRTS-FPAQVRICTKTRYPPLMESQFRTVLGDNYYNHHHFY 136
Query: 295 LELSIAETLSLL 306
EL A+T +L+
Sbjct: 137 FELDHAQTKALI 148
>Os09g0563700 Conserved hypothetical protein
Length = 710
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 79/136 (58%), Gaps = 6/136 (4%)
Query: 181 LGGYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLPLFLYNYTTHQLHGVFEASSF 240
+ G IF+ N T + + +FGLP Y+ VR I G+PLFL+++T +L+GVFEA+S
Sbjct: 16 MAGAIFMSNTATRELCFRSNIFGLPIEYQPFVRNIRQGMPLFLFDHTERKLYGVFEATSD 75
Query: 241 GGSNIDPTAWEDKKCKGESRFPAQVRIRIRKLCKPLEEDAFRPVL--HHYDGPKFRLELS 298
GG NI +A+ C +PAQV +I C+PL ED F P + ++Y KF +LS
Sbjct: 76 GGFNIIRSAFSSIGCS----YPAQVCFKIIWKCRPLTEDEFSPAIKENYYMPWKFYFDLS 131
Query: 299 IAETLSLLDLCEKEGV 314
+ + L L +++ V
Sbjct: 132 YQQVVCLYQLFDEKRV 147
>Os02g0745600 Conserved hypothetical protein
Length = 488
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 72/129 (55%), Gaps = 9/129 (6%)
Query: 182 GGYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLPLFLYNYTTHQLHGVFEASSFG 241
G+IF+C+ T E + +FGLP D V I PG LFLY++ L+G+++A + G
Sbjct: 125 AGFIFMCSAKTKPECFQNGVFGLPKGKIDVVEKIQPGAKLFLYDFDLKLLYGIYKAKTKG 184
Query: 242 GSNIDPTAWEDKKCKGESRFPAQVRIRIRKLCKPLEEDAFRPVL-HHYDGP-KFRLELSI 299
G ++ A+ K FPAQV+ ++ K C PL E +F+ + +Y+ KF ELS+
Sbjct: 185 GLDLVRGAFHGK-------FPAQVKFKVDKDCLPLPESSFKHAIKENYNSKGKFTQELSL 237
Query: 300 AETLSLLDL 308
+ LL+L
Sbjct: 238 KQVHRLLEL 246
>Os06g0227200 Conserved hypothetical protein
Length = 704
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 70/135 (51%), Gaps = 9/135 (6%)
Query: 182 GGYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLPLFLYNYTTHQLHGVFEASSFG 241
GG IF+CN T E + +LFG P V I PG+ LFLY++ L+GV++A S G
Sbjct: 249 GGLIFMCNAQTKPECFQSRLFGYPRGKIGIVEKIRPGMRLFLYDFDLKLLYGVYKAVSKG 308
Query: 242 GSNIDPTAWEDKKCKGESRFPAQVRIRIRKLCKPLEEDAFRPVL--HHYDGPKFRLELSI 299
G ++ A+ K FPAQV+ +I K C PL E F+ + ++ KF EL+
Sbjct: 309 GLDLVRDAFSGK-------FPAQVKFKIDKDCLPLPESRFKDAIRENYSAKSKFNPELNS 361
Query: 300 AETLSLLDLCEKEGV 314
+ L+ L E V
Sbjct: 362 RQVHRLIALFESVSV 376
>Os11g0525700 Conserved hypothetical protein
Length = 644
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 65/128 (50%), Gaps = 8/128 (6%)
Query: 182 GGYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLPLFLYNYTTHQLHGVFEASSFG 241
GYIF+C+ T E R + G P +V I G LFLY++ + LHG + A+S G
Sbjct: 46 AGYIFMCSGATKPECYARGVMGQPRGRLPAVSRIRRGAALFLYDFDSRHLHGPYRAASDG 105
Query: 242 GSNIDPTAWEDKKCKGESRFPAQVRIRIRKLCKPLEEDAFRPVL-HHYDGPKFRLELSIA 300
G ++ P A+ RFPAQV+ I P+ E + R + +Y KF EL++A
Sbjct: 106 GLDLAPAAF-------GGRFPAQVKFTIDGDFMPIPESSLRSAIKENYSNGKFSSELTLA 158
Query: 301 ETLSLLDL 308
+ +L L
Sbjct: 159 QVENLRTL 166
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 182 GGYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLPLFLYNYTTHQLHGVFEASSFG 241
GYIF+CN T E + ++ GLP D V I G LFLY++ L+G + A S G
Sbjct: 226 AGYIFMCNGVTKAECYRHRVMGLPLGSLDVVSRIRRGTALFLYDFDAKHLYGPYHADSNG 285
Query: 242 GSNIDPTAWEDKKCKGESRFPAQVRIRIRKLCKPLEEDAFRPVL-HHYDGPKFRLELSIA 300
G + P A+ RFPAQV+ + P+ E + R + +Y KF EL++
Sbjct: 286 GLTLVPDAF-------RGRFPAQVKFTVDGDFMPIPESSLRTAIKENYSNGKFSPELTLV 338
Query: 301 ETLSLLDL 308
+ L L
Sbjct: 339 QVEKLRAL 346
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,225,432
Number of extensions: 401116
Number of successful extensions: 729
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 718
Number of HSP's successfully gapped: 10
Length of query: 314
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 213
Effective length of database: 11,762,187
Effective search space: 2505345831
Effective search space used: 2505345831
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)