Os05g0498700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Gda-1 protein.
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Os05g0498700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Gda-1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.02 | 0.312 | 14.7 | -1.02 | 0.767 | 0.809 | 0.498 | -0.863 | -0.0731 | 3.48 | 21.4 | 2048 | -- | -- |
| 45.68 | 0.315 | 14.7 | -0.803 | 0.754 | 0.885 | 0.555 | -- | -0.0165 | 3.43 | 21.33 | 2073 | -- | -- |
| 44.38 | 0.31 | 14.7 | -1.02 | 0.784 | 0.751 | -- | -0.963 | -0.0935 | 3.46 | 22 | 1865 | -- | -- |
| 46.43 | 0.317 | 14.7 | -0.799 | 0.763 | 0.876 | -- | -- | -0.00796 | 3.51 | 21.4 | 2073 | -- | -- |
| 73.24 | 0.399 | 14.7 | -0.881 | -- | 0.804 | -- | -0.746 | -0.0839 | -- | 22.4 | 1154 | -- | -- |
| 67.19 | 0.384 | 14.6 | -0.384 | 0.781 | -- | 0.417 | -- | 0.239 | 3.26 | -- | -- | -- | -- |
| 67.74 | 0.385 | 14.6 | -0.392 | 0.784 | -- | -- | -- | 0.236 | 3.31 | -- | -- | -- | -- |
| 75.44 | 0.405 | 14.7 | -0.639 | -- | 0.826 | -- | -- | 0.0284 | -- | 22.13 | 1162 | -- | -- |
| 56.99 | 0.352 | 14.7 | -- | 0.721 | 0.585 | -- | -- | 0.101 | 3.47 | 22.37 | 1245 | -- | -- |
| 102.45 | 0.473 | 14.6 | -0.359 | -- | -- | -- | -- | 0.257 | -- | -- | -- | -- | -- |
| 71.8 | 0.396 | 14.6 | -- | 0.776 | -- | -- | -- | 0.28 | 3.31 | -- | -- | -- | -- |
| 85.11 | 0.43 | 14.7 | -- | -- | 0.671 | -- | -- | 0.0892 | -- | 22.39 | 1130 | -- | -- |
| 105.85 | 0.48 | 14.6 | -- | -- | -- | -- | -- | 0.297 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.33 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 3 | 42.36 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 10 | 42.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 10 |
| 54 | 42.74 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 10 |
| 97 | 42.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 122 | 42.91 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 291 | 43.28 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 669 | 44.39 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 726 | 44.54 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 751 | 44.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 787 | 44.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 788 | 44.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 800 | 44.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 844 | 44.82 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 859 | 44.86 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 922 | 44.96 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 923 | 44.96 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 956 | 45.02 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |