BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0498700 Os05g0498700|AK065975
(314 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G27090.1 | chr3:9990020-9991407 FORWARD LENGTH=297 347 4e-96
AT5G42050.1 | chr5:16815630-16816932 FORWARD LENGTH=350 261 4e-70
AT5G01660.1 | chr5:244504-248442 REVERSE LENGTH=657 106 2e-23
AT3G11000.2 | chr3:3447847-3450283 FORWARD LENGTH=608 105 5e-23
AT5G61910.1 | chr5:24861091-24863729 REVERSE LENGTH=739 99 3e-21
AT2G35140.1 | chr2:14813990-14816808 FORWARD LENGTH=880 87 1e-17
AT2G32910.1 | chr2:13959685-13961989 FORWARD LENGTH=692 84 1e-16
>AT3G27090.1 | chr3:9990020-9991407 FORWARD LENGTH=297
Length = 296
Score = 347 bits (891), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 182/315 (57%), Positives = 216/315 (68%), Gaps = 23/315 (7%)
Query: 1 MDNLWHLGDEFRGQSKVVEDRQWSLMTSKLAEINKSKAERTNELDYARMNTIPDVKQWDK 60
MD+ W LGDE RGQ++ ED +WS + +KLAE + K ER N LD ++ T + + +K
Sbjct: 1 MDSFWQLGDELRGQTRASEDHKWSTVATKLAEQTRMKGERMNNLDLSKGYT--EFRPSEK 58
Query: 61 VSYHQDESKMDHLNLGLMNLDLKMNDIRMNDAAMKNPFRGMAYNMNQLYPKGGNGNVNSF 120
S+ ++ + +NLD K + M +M++ YNMN ++ K N F
Sbjct: 59 FSFQENNLNFNM-----LNLDGKFGESIMGKTSMQSN----VYNMNTVFQK------NDF 103
Query: 121 KM--NVGVNKYLHSPNGKDVXXXXXXXXXXXXXXXXXXXXXXAVDKRFKTLPTSEMLPRN 178
K N+ VNKY NG V AVDKRFKTLP SE LPRN
Sbjct: 104 KSGGNMKVNKY----NGNVVANKEMSNNKHNNNCNDNGNMNLAVDKRFKTLPASETLPRN 159
Query: 179 EVLGGYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLPLFLYNYTTHQLHGVFEAS 238
EVLGGYIFVCNNDTMQED+KR LFGLP RYRDSVRAI PGLPLFLYNYTTHQLHG+FEA+
Sbjct: 160 EVLGGYIFVCNNDTMQEDMKRHLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAT 219
Query: 239 SFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKLCKPLEEDAFRPVLHHYDGPKFRLELS 298
+FGG+NID TAWEDKKCKGESRFPAQVRIR+RK+CK LEED+FRPVLHHYDGPKFRLELS
Sbjct: 220 TFGGTNIDATAWEDKKCKGESRFPAQVRIRVRKICKALEEDSFRPVLHHYDGPKFRLELS 279
Query: 299 IAETLSLLDLCEKEG 313
+ ETL LLDLCE+ G
Sbjct: 280 VPETLDLLDLCEQAG 294
>AT5G42050.1 | chr5:16815630-16816932 FORWARD LENGTH=350
Length = 349
Score = 261 bits (667), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 116/148 (78%), Positives = 133/148 (89%)
Query: 161 AVDKRFKTLPTSEMLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLP 220
+DKRFKTLP +E LPRNE +GGYIFVCNNDTM+E+LKRQLFGLP RYRDSVRAI PGLP
Sbjct: 196 GLDKRFKTLPPAEALPRNETIGGYIFVCNNDTMEENLKRQLFGLPPRYRDSVRAITPGLP 255
Query: 221 LFLYNYTTHQLHGVFEASSFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKLCKPLEEDA 280
LFLYNY+THQLHG++EA+SFGG+NI+ A+EDKKC GESRFPAQVR RK+C PLEED+
Sbjct: 256 LFLYNYSTHQLHGIYEAASFGGTNIELNAFEDKKCPGESRFPAQVRAITRKVCLPLEEDS 315
Query: 281 FRPVLHHYDGPKFRLELSIAETLSLLDL 308
FRP+LHHYDGPKFRLELS+ E LSLLD+
Sbjct: 316 FRPILHHYDGPKFRLELSVPEVLSLLDI 343
>AT5G01660.1 | chr5:244504-248442 REVERSE LENGTH=657
Length = 656
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 77/130 (59%), Gaps = 3/130 (2%)
Query: 181 LGGYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLPLFLYNYTTHQLHGVFEASSF 240
LGG +F C +T++E + +QLFGLP+ + V+ I GLPLFL+NY+ LHG+FEA+
Sbjct: 18 LGGVVFGCTKNTIKECMSKQLFGLPSNHYPYVQKIDIGLPLFLFNYSDRTLHGIFEAAGC 77
Query: 241 GGSNIDPTAWEDKKCKGESRFPAQVRIRIRKLCKPLEEDAFRPVL--HHYDGPKFRLELS 298
G N DP W + + +PAQV I +R C+PL E+ F+P + ++Y F EL
Sbjct: 78 GQLNFDPYGWTSDGSE-RTSYPAQVPISVRLQCEPLSEEKFKPAIADNYYSSHHFWFELD 136
Query: 299 IAETLSLLDL 308
+T L L
Sbjct: 137 HFQTRKLTCL 146
>AT3G11000.2 | chr3:3447847-3450283 FORWARD LENGTH=608
Length = 607
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 77/130 (59%), Gaps = 3/130 (2%)
Query: 181 LGGYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLPLFLYNYTTHQLHGVFEASSF 240
L G IF C T++E + LFGLPA + ++ I PGL LFL+NY+ LHG+FEA+S
Sbjct: 130 LCGVIFGCKFSTIKECYAKNLFGLPAPHMAYIKNIDPGLTLFLFNYSDRTLHGIFEAASE 189
Query: 241 GGSNIDPTAWEDKKCKGESRFPAQVRIRIRKLCKPLEEDAFRPVL--HHYDGPKFRLELS 298
G NID AW S +PAQV++R+R C+PL E+ F PV+ ++ D F EL
Sbjct: 190 GKLNIDSKAWSPNG-TDPSPYPAQVKVRVRVRCEPLPEEKFSPVIVENYNDDKMFWFELD 248
Query: 299 IAETLSLLDL 308
+T LL L
Sbjct: 249 RGQTNKLLRL 258
>AT5G61910.1 | chr5:24861091-24863729 REVERSE LENGTH=739
Length = 738
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 8/135 (5%)
Query: 175 LPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLPLFLYNYTTHQLHGV 234
L +E L GYIF+CN T + + ++FG+P +D V +I PG+ LFLY++ L+GV
Sbjct: 55 LDHHEQLPGYIFMCNGRTKTDCYRYRVFGIPRGGKDVVESIKPGMKLFLYDFEKRLLYGV 114
Query: 235 FEASSFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKLCKPLEEDAFRPVLH-HYDGPKF 293
+EA+ G +I+P A+E K +PAQV RI C PL E+ F+ ++ +Y G KF
Sbjct: 115 YEATVGGRLDIEPEAFEGK-------YPAQVGFRIVMNCLPLTENTFKSAIYENYKGSKF 167
Query: 294 RLELSIAETLSLLDL 308
+ ELS + +SLL L
Sbjct: 168 KQELSPHQVMSLLSL 182
>AT2G35140.1 | chr2:14813990-14816808 FORWARD LENGTH=880
Length = 879
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 73/128 (57%), Gaps = 6/128 (4%)
Query: 183 GYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLPLFLYNYTTHQLHGVFEASSFGG 242
G IF+ NN T +E L R+LFGLP V+ + G+ LFL+ + +LHGVF+A S G
Sbjct: 23 GAIFMSNNSTRKECLSRKLFGLPIGLGGFVKHVKAGMMLFLFEFEKRELHGVFQACSDGA 82
Query: 243 SNIDPTAWEDKKCKGESRFPAQVRIRIRKLCKPLEEDAFRPVLH--HYDGPKFRLELSIA 300
NI+P A+ + G+ +FPAQV+ + C+PL E F +H ++ KF LS A
Sbjct: 83 INIEPNAF---RSSGK-QFPAQVKFTEKWRCRPLCESEFGNAIHENYFTPTKFNFGLSKA 138
Query: 301 ETLSLLDL 308
+ LL L
Sbjct: 139 QVQRLLKL 146
>AT2G32910.1 | chr2:13959685-13961989 FORWARD LENGTH=692
Length = 691
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 74/130 (56%), Gaps = 9/130 (6%)
Query: 181 LGGYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLPLFLYNYTTHQLHGVFEASSF 240
+GG IF+CN T + + + G+ + +D V+ I PGL LFLY+Y L+G+FEASS
Sbjct: 319 IGGLIFMCNTKTRPDCFRFSVMGVQEKRKDFVKGIKPGLKLFLYDYDLKLLYGIFEASSA 378
Query: 241 GGSNIDPTAWEDKKCKGESRFPAQVRIRIRKLCKPLEEDAF-RPVLHHYDGP-KFRLELS 298
GG ++ A+ G S FPAQVR ++ C PL E F + ++ +Y+ KF+ EL+
Sbjct: 379 GGMKLERNAF------GGS-FPAQVRFKVFSDCIPLAESQFKKAIIENYNNKNKFKTELT 431
Query: 299 IAETLSLLDL 308
+ L L
Sbjct: 432 HKQVFKLKKL 441
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,780,398
Number of extensions: 272324
Number of successful extensions: 559
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 549
Number of HSP's successfully gapped: 7
Length of query: 314
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 216
Effective length of database: 8,419,801
Effective search space: 1818677016
Effective search space used: 1818677016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)