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Os05g0594100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to GDA2 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.5 (0.0167) R2 : 0.543
β1 : 1.13 (0.061) R2dD : 0.358 R2D : 0.283
β2 : 0.606 (0.0427) R2dC : 0.202 R2C : 0.169
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.252 (0.0356) R2dN8 : 0.0677 R2N8 : -0.00556
σ : 0.313
deviance : 44.74
__
_____
C
peak time of C : 16.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.66 0.296 13.5 1.11 0.593 -0.37 0.961 -0.0303 0.243 19.3 2.716e-05 33 -- --
39.66 0.293 13.5 1.11 0.593 -0.368 0.945 -- 0.245 19.3 8.567e-06 32 -- --
41.7 0.301 13.5 1.06 0.605 -0.411 -- 0.207 0.256 19.5 0.01011 32 -- --
42.03 0.302 13.5 1.09 0.603 -0.361 -- -- 0.245 19.2 1.622e-06 32 -- --
44.18 0.31 13.5 1.12 -- -0.652 -- -0.517 0.228 -- 0.09544 590 -- --
43.93 0.311 13.5 1.13 0.603 -- 0.592 -- 0.249 16.7 -- -- -- --
44.74 0.313 13.5 1.13 0.606 -- -- -- 0.252 16.4 -- -- -- --
45.09 0.313 13.5 1.09 -- -0.632 -- -- 0.213 -- 3.143 575 -- --
73.79 0.4 13.6 -- 0.55 -0.314 -- -- 0.184 18.9 0.0001247 33 -- --
64.43 0.375 13.5 1.11 -- -- -- -- 0.236 -- -- -- -- --
78.46 0.414 13.6 -- 0.584 -- -- -- 0.126 16.4 -- -- -- --
75.14 0.404 13.6 -- -- -0.702 -- -- 0.122 -- 0.00999 596 -- --
96.77 0.459 13.6 -- -- -- -- -- 0.113 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.65 radiation 40.0 1440 < th dose dependent rect. 19 10
3 37.93 humidity 70.0 30 > th dose independent rect. 18 11
4 37.96 temperature 10.0 1440 > th dose independent rect. 19 11
7 37.96 temperature 30.0 1440 < th dose independent rect. 19 11
11 37.96 humidity 50.0 1440 > th dose independent rect. 19 11
13 37.96 atmosphere 995.0 1440 > th dose independent rect. 19 11
14 37.96 radiation 20.0 1440 < th dose independent rect. 19 11
23 37.96 temperature 10.0 1440 > th dose independent rect. 6 13
28 38.20 temperature 30.0 90 < th dose independent rect. 17 12
29 38.25 temperature 15.0 30 > th dose dependent rect. 2 12
32 38.32 temperature 20.0 10 > th dose dependent rect. 9 5
39 38.41 temperature 20.0 90 > th dose dependent rect. 8 7
86 38.63 radiation 10.0 30 < th dose independent sin 12 NA
99 38.69 radiation 10.0 90 < th dose dependent rect. 17 12
108 38.73 humidity 60.0 90 > th dose independent rect. 4 13
114 38.77 wind 9.0 270 < th dose independent rect. 3 13
118 38.79 wind 7.0 720 < th dose independent rect. 17 2
119 38.79 atmosphere 1005.0 90 > th dose independent rect. 17 11
124 38.82 radiation 40.0 270 < th dose dependent rect. 16 11
125 38.83 wind 5.0 90 < th dose independent rect. 9 20
128 38.84 radiation 1.0 30 < th dose independent rect. 18 11
131 38.86 radiation 20.0 720 < th dose independent rect. 5 2
132 38.86 radiation 20.0 270 < th dose independent rect. 16 11
135 38.87 radiation 30.0 720 < th dose dependent rect. 17 2
139 38.89 precipitation 0.1 270 < th dose independent rect. 16 11
141 38.89 precipitation 0.1 270 < th dose dependent rect. 16 11
143 38.90 wind 9.0 90 < th dose independent rect. 5 13
151 38.93 temperature 15.0 720 > th dose independent rect. 5 2
152 38.93 humidity 50.0 720 > th dose independent rect. 17 2
153 38.93 wind 5.0 90 < th dose independent rect. 18 11
160 38.95 humidity 70.0 720 > th dose independent rect. 5 2
161 38.95 precipitation 0.1 720 < th dose independent rect. 5 2
162 38.95 temperature 15.0 270 > th dose independent rect. 3 13
163 38.95 precipitation 0.1 720 < th dose dependent rect. 5 2
173 38.98 wind 7.0 720 < th dose independent rect. 5 2
176 38.98 temperature 30.0 720 < th dose independent rect. 5 2
177 38.98 humidity 50.0 720 > th dose independent rect. 5 2
179 38.98 atmosphere 995.0 720 > th dose independent rect. 5 2
180 38.98 atmosphere 1015.0 720 < th dose independent rect. 5 2
185 38.98 temperature 10.0 720 > th dose independent rect. 7 22
187 38.99 wind 1.0 720 > th dose independent rect. 17 2
198 39.00 radiation 20.0 30 < th dose dependent sin 12 NA
208 39.02 wind 1.0 90 > th dose independent rect. 4 13
215 39.04 temperature 20.0 270 > th dose dependent rect. 9 2
221 39.05 temperature 10.0 270 > th dose independent rect. 16 11
222 39.05 radiation 40.0 270 < th dose independent rect. 16 11
224 39.05 atmosphere 1015.0 270 < th dose independent rect. 3 13
229 39.06 atmosphere 995.0 270 > th dose independent rect. 3 13
233 39.07 temperature 10.0 720 > th dose independent rect. 17 2
234 39.07 atmosphere 1015.0 720 < th dose independent rect. 17 2
235 39.07 radiation 30.0 720 < th dose independent rect. 17 2
237 39.07 precipitation 0.1 720 < th dose independent rect. 17 2
242 39.07 temperature 10.0 720 > th dose independent rect. 19 22
243 39.07 precipitation 0.1 720 < th dose dependent rect. 17 2
244 39.07 atmosphere 995.0 90 > th dose dependent rect. 17 11
246 39.08 radiation 40.0 90 < th dose independent rect. 5 12
282 39.13 radiation 10.0 720 < th dose independent rect. 17 2
296 39.16 temperature 15.0 90 > th dose independent rect. 5 13
304 39.17 temperature 20.0 10 > th dose dependent sin 2 NA
323 39.19 wind 9.0 720 < th dose independent rect. 19 22
328 39.19 humidity 50.0 90 > th dose dependent rect. 5 12
338 39.20 temperature 15.0 720 > th dose dependent rect. 5 1
375 39.24 temperature 10.0 43200 > th dose independent rect. 10 5
396 39.25 atmosphere 1015.0 90 < th dose independent rect. 5 13
414 39.27 atmosphere 995.0 90 > th dose independent rect. 18 11
443 39.29 radiation 30.0 720 < th dose independent rect. 19 13
452 39.30 wind 1.0 90 > th dose independent rect. 17 11
461 39.30 precipitation 0.1 270 < th dose independent rect. 3 13
467 39.30 precipitation 0.1 270 < th dose dependent rect. 3 13
476 39.31 precipitation 0.1 720 < th dose independent rect. 7 22
485 39.31 precipitation 0.1 720 < th dose dependent rect. 7 22
489 39.32 humidity 70.0 720 > th dose independent rect. 19 13
490 39.32 atmosphere 995.0 720 > th dose independent rect. 19 21
492 39.32 radiation 40.0 720 < th dose dependent rect. 5 2
528 39.36 humidity 70.0 720 > th dose independent rect. 20 11
530 39.36 temperature 30.0 90 < th dose independent rect. 4 13
532 39.36 precipitation 0.1 30 < th dose independent rect. 5 13
539 39.36 precipitation 0.1 30 < th dose dependent rect. 5 13
543 39.37 precipitation 0.1 720 < th dose independent rect. 8 11
556 39.37 precipitation 0.1 720 < th dose dependent rect. 8 11
558 39.38 radiation 10.0 30 > th dose independent sin 12 NA
580 39.39 atmosphere 1015.0 720 < th dose independent rect. 7 13
595 39.41 temperature 10.0 720 > th dose independent rect. 8 11
597 39.41 atmosphere 1015.0 720 < th dose independent rect. 8 11
598 39.41 temperature 10.0 720 > th dose independent rect. 19 13
599 39.41 temperature 30.0 720 < th dose independent rect. 19 13
602 39.41 atmosphere 995.0 720 > th dose independent rect. 19 13
603 39.41 precipitation 0.1 720 < th dose independent rect. 7 13
608 39.41 precipitation 0.1 720 < th dose dependent rect. 7 13
661 39.46 radiation 10.0 30 > th dose independent rect. 9 5
681 39.47 wind 9.0 720 < th dose independent rect. 20 11
706 39.49 temperature 20.0 720 > th dose independent rect. 3 1
708 39.49 wind 9.0 720 < th dose independent rect. 19 13
710 39.49 radiation 10.0 30 > th dose independent rect. 14 19
765 39.55 wind 9.0 720 < th dose dependent rect. 5 2
793 39.58 radiation 1.0 720 < th dose independent rect. 22 7
802 39.58 radiation 10.0 720 < th dose dependent rect. 22 7
808 39.59 humidity 90.0 30 < th dose independent rect. 9 5
809 39.59 wind 5.0 90 < th dose independent rect. 9 6
816 39.59 humidity 50.0 30 > th dose dependent rect. 18 11
833 39.61 wind 9.0 720 < th dose independent rect. 22 7
836 39.61 humidity 50.0 720 > th dose dependent rect. 5 2
885 39.64 wind 7.0 10 < th dose independent rect. 9 5
886 39.64 temperature 15.0 720 > th dose independent rect. 10 7
887 39.64 temperature 10.0 720 > th dose independent rect. 22 7
888 39.64 temperature 30.0 720 < th dose independent rect. 22 7
889 39.64 humidity 50.0 720 > th dose independent rect. 22 7
892 39.64 atmosphere 995.0 720 > th dose independent rect. 22 7
899 39.64 temperature 10.0 720 > th dose independent rect. 5 17
966 39.68 temperature 20.0 30 > th dose independent rect. 9 5
968 39.68 wind 5.0 90 < th dose independent rect. 9 10
985 39.69 precipitation 0.1 720 < th dose independent rect. 22 7
996 39.69 wind 9.0 720 < th dose dependent rect. 17 2
999 39.69 precipitation 0.1 720 < th dose dependent rect. 22 7